RNA id: XM_039818905.1


Basic Information

Item Value
RNA id XM_039818905.1
length 3818
RNA type mRNA
GC content 0.45
exon number 6
gene id nxpe3
representative False

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 20875392 ~ 20885262 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgtgatcTTATTTGTACAGGAATTTTGCCCTTTTCTCCTGAGTGGCAAAATATGGTGCAGCCTCTCCAGAAGCGCTGTAGCGATCTGCGGTGGCATTCTGGATTGTAATGAACTCAAAAAAAGTGCTCttggatgttgttgttgttgttgttggcgtCGATGTAGCGTAGAACAAGCACCAGCTGGCAGTGGGTGGAAATGTCAGTCGGCTTGAATGGCGATAAAATCCGCGATCTTTATTTACTCCAGAATGTGATCCCTCGGCCTCAGCACTGACGGCTCGTTTTGTAAGGTTTTTGACGCACCTTTAAAAACGGTGGCTGTCTTAAGGTGCTCCTCCAGTACTCTGTCGAGGGAGGCAACGAAGTCCACCAGTCCCCCGGAAATGCCAGGATTGCTCCAGGTGTCGGTTACTCGTTTATCTTATCCACCTCCTCGTTGTGTTTCTTCACCGCAACTACCGCAAATAGGATTTGAACTGCAACGAGTTCATTCAGCAGCATCAGTCGCTGAGGACGAAATGATGCCATCATTGCCGGTATGACAGCATAGAGTGAAACAGGGCCTGATCATGGGAGACAGGAAGTCAACATGTGCCGAAATTTGTCCAAATATACCCTCATCTTCCTCATTCTAGCCCTGTCTGGTCTCTACTTCCTGCTACGCAACATCCACACTGTGGAGAACTGGAACTGCCACACTATTTCAGCCCTTTACCAGCTCCAGAGCAGGATCCAGTCATCCTTCGTCCCAGTGAATCTCCCTACTTTTCATCACAACCGCACCTTCTGTGCCCATCTGGGCCAGAAACCGTCCCCTGAAGATGAACTGGAGGAGCGTTACCTGTTGGACTCTATCGCCTGGCCCGGGCCTCCGCCTCGCTCTACACCAACTGCCCTGCGCCAGACGAGTGACCCCATGCACAGCCTGTTCGCCATCCTTCCCACTAAGGGAGCAAGGGAGTGGCATGTGGGCGACCAGCTGGAGGCGCTCGTCCAAATGCATGACTTCCAGGGTCGTCCCAAGCGCTACGGCGGGGATTTCATTTTGGCCAGGCTGCACTCACCGGAGCTTGGAGCAGGTGTAGCAGGTAAAGTGCTGGACCACAGGAATGGATTTTATTCCGCTATGTTCCCGCTCCTGTGGGTCGGTTCTGCACAGGTTGAAATTACGTTGGTGCACTCAAGCGAGGCTGTTGCTGTGCTGCGACGGTTGAGGGATGAAAGGCCCGATCGAGTGTTTTTCAAGAGCCTGTTCCGCCTCGGCTTTCTGTCTGAAACTACTGTGTGCAACATGTGTCTGCCCCCGGACCACCAGCCTCTGTGCAACTACACAGACCTTTACACAGGGGAACCCTGGTACTGCTACAAGCCTAAGATGCTCAGCTGTGACACCAGAATCAACCACGCCAAAGGAGGCTATCTGAAACACCTTATCACCAACAAAGAAGCATTGCTTTTTCAGAGTGGTGTAAACATTAAAGTTCGCATACACGCTTCAGGACCCGACAGAATCAACGTGTTGCCTTCCAGGAAAGAAATAGATGTAGAAAGCAGCAGTATAAAACCAGAACCTCTTAAGCTGGCACCGTCTGGATATTACTACGAGGACTCATGGCGGCCATTAAGTGGCGTTGCATTGGACCAGTTCAATGAATCATCTGACATCACTCAGTGTTTGAAGAACAAGGTGATCAACATGTATGGAGACTCTACCGTCAGGCAGTGGTTTGAGTACCTTATTGCTTTAGTACCAGGATTAAAGGAATTTAATCTGGACAGTCCTAAAAACGTTGGGCCTTTCATGGCAGTGGACAGCACCCATAATATTCTTTTGAAGTACCGCTGCCATGGCCCGCCCATCCGCTTCTCCACTGTCATGTCCACTGAGTTGCGGTACATTTCAAACGAGCTGGACGGCCTCTCTGGGGGTCCCAACACTGTCGTGGTCCTCAGCATTTGGGCCCATTTCAGCACCTTTCCTGTGGAGGTGTACATACGACGGCTCCGTCACATTAGGCGAGCCCTGGTGAGACTTCTTGAACGAGCGCCGGGGACGATCGTTGTGATCCGCTCAGGCAACCTCCAAGCCCTGGACCAAGAGGTGAGCCTGTACAACAGCGACTGGTACTCCCTGCAGCTCGATGAGGTGCTCAGATCCATGTTCAAGGGACTCAACGTTCTGCTGGTGGACGCCTGGCAAATGAGTTTAGCACACCACCTTCCTCACGCCCTCCATCCACCTCCAGTCATCGTCAAGAACATGATAGACACACTTTTGTCTTACGTTTGcccagagaagaaaaaaagccaaCTGATATAGAAGAAGAGCAACAATAGTGGATCTTGTTGTTGAAGGAAACTGAGGAGTTTACTGTGTGAATCCATCGACCAGTTCTTCAGTCAAGTGTTCCCCAAAGCTACATACCCTTTAAAACTGTCTTTACGGAGAGATTTGCCAGACTTCTAGTACTGATCTATGTTTACTTgcctgttatatattttttttgaacccccaaaaaaaatttttttcttttgaaaatgcCAAAGACTTTGGCGCAGTGATTGTTACTTCCTTTCTGCTTTTCTTACCAAAGTGTTTTGTGTCTGCAGTATTTTTACCTTAGCTTAGCTGGCATTCTTTCAAGGTCACATTTTGGACTTTATatgtatgcatttgtgtgttaaTTTTGCCAAAGCTGAAGACTCAGTGAGTTCTTGTTTCTAAGATTACTTAAAGCataatttaaaagacaaaaccTGCGACTATTTTGTCAACCATCGTTTAACTTATTGAGGAACATCTTTTCAGCTTTGATATCCTCATACATCACGTTAAGATCCCACTTTGTTTCAGTTGAATTTTTCCTGATGACTTCGTTATCTGACAGGTCAGCCTTCAGACACTCAGAACTTTCACACTGCTTTGATAAATGTTCTGAACATCACTTCAGATGCTCACAGTTGTGTCTGTTCATTTGAGGCTAGACCGTTGCATACATTTCTAATATCAGCTCTTTTGTATGAATAGCTAACTTGCTATTGCAGTGATTACCTTTCTATGTTCAATTTTGTTCTAGATGTTTTATACGGACACATTAACATGATTAAATAATGTATGCTGCCACATGTTCATCATAGGAAGACGGTAAATATTGGAGAAGAGAGTTATATCAGGTCTGTGTGACACAAAGAGAAAATGTGCCTATTTTCTGTCTTATCCTGTTTGTTGCAGCCTTCTAGATCATATTGCACAACAGCTGCTGCagacattacttttttttatctcatgTGATGGTGTCACATTGCTGAGCCAGCCCTGTGTAGCAAATCATgtcaaaatattttgtttagaaaatcgcAACATCTGTTCACAGCTGTGGTAGACCAGCTTGTATCGGTGATGATGAATATTTGCAGTTTATTTGTGTGCTTTCTTTCTGTTAAAGTGCAGAAAAAGAAATTGAGGATTTTTATATCTTAAAAAGTTTGGGATTGATGAAAATGTAAGGAATAGAATGATAggacattatttcatatttgcTGCACAGTTGACATAGCTGTAAATCCCGAAATTTCCCTTATCGTGATATTCACCTTTAACAGAATAAATTTAATAAATCTAAATGTGCAGTAAGGGGTCTGCACCACTCACTACCTTTACCTTTATTACTGTATATCAGTGGCAGTTGTTACTCTGTGGCTTACCTGCTGAATAATGTTACAGCTCGTCAAAATGCCATTAAATGTTtaacaaatgaaacaaaaacattgcAATAAATTATTGGATAATGTTACATTAATCCAGTGTCATAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169132 lncRNA upstream 41287 20832494 ~ 20835754 (+) True G125749
TU169119 lncRNA upstream 51496 20795045 ~ 20825545 (+) True G125738
TU169089 lncRNA upstream 163847 20712406 ~ 20713194 (+) True G125718
TU169071 lncRNA upstream 189994 20686697 ~ 20687047 (+) True G125702
XR_005641098.1 lncRNA upstream 199069 20674712 ~ 20677972 (+) False LOC120570651
XR_005641074.1 lncRNA downstream 18732 20903994 ~ 20911358 (+) True LOC120570516
TU169214 lncRNA downstream 25561 20910823 ~ 20911178 (+) False LOC120570516
TU169228 lncRNA downstream 68475 20953737 ~ 20958039 (+) True G125826
TU169227 lncRNA downstream 73445 20958707 ~ 20959962 (+) True G125825
TU169327 lncRNA downstream 305770 21191032 ~ 21191666 (+) True G125892
XM_039818901.1 mRNA upstream 5707 20865935 ~ 20871334 (+) True cep97
XM_039818721.1 mRNA upstream 18125 20853110 ~ 20858916 (+) False mpc2b
XM_039817059.1 mRNA upstream 53880 20813487 ~ 20823161 (+) True gpr161a
XM_039817060.1 mRNA upstream 53880 20814061 ~ 20823161 (+) False gpr161a
XM_039817062.1 mRNA upstream 63660 20809318 ~ 20813381 (+) True otc
XM_039818303.1 mRNA downstream 52306 20937568 ~ 20953570 (+) True pou2f1b
XM_039818627.1 mRNA downstream 86034 20971296 ~ 20976876 (+) True lamp1b
XM_039817774.1 mRNA downstream 111251 20996513 ~ 21005979 (+) False tfdp1a
XM_039817778.1 mRNA downstream 111252 20996514 ~ 21007034 (+) True tfdp1a
XM_039817777.1 mRNA downstream 112762 20998024 ~ 21005979 (+) False tfdp1a
TU169142 other upstream 11599 20860152 ~ 20865442 (+) True G125757
TU169140 other upstream 18131 20853089 ~ 20858910 (+) True mpc2b
TU168970 other upstream 355767 20492178 ~ 20521274 (+) False G125627
XR_005640959.1 other upstream 611803 20174828 ~ 20265238 (+) False myo16
XR_005641085.1 other downstream 734086 21619348 ~ 21627452 (+) False sox1a
XR_005641000.1 other downstream 769869 21655131 ~ 21688802 (+) False LOC120569986
TU169945 other downstream 1921931 22807193 ~ 22815102 (+) True G126363
XR_005641105.1 other downstream 3982059 24867321 ~ 24867439 (+) True LOC120570682
TU170822 other downstream 4744845 25630107 ~ 25658726 (+) False cacnb4a

Expression Profile