RNA id: TCONS_00008613


Basic Information

Item Value
RNA id TCONS_00008613
length 2074
lncRNA type antisense_over
GC content 0.44
exon number 5
gene id XLOC_003466
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 25181857 ~ 25228195 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGACATTTgccctgggagcactgtacaaatgtggcggcgctattgacgcaggCTCAGagtccgtatgcgatatctagacTAGTGTATCGATCTATGGCTTCCATACTTTCTGGTGCGGGTCGCCTCATGGTGGACGCCATTCAGGTGTCAGCATAAGTCCATGACGACCGCCGTGACTAGTGcaccatgacagcagtttcaagGCATTGTCAGCAATGGAGTAGATGTGAGGTGGAGCCTCCGAGCGGCGTTTGCCTTTGTAGGCAGCCACTACAGGGGCAGTGTAGACGGGGAGCCATTTATATGGGTTCACGGTCACACAGAAGAGCCCAGAGTACGTCTGCCATGAGGAGATGACAAGATTAACACCAAaGTTTTATTTTGTCTTCAACATCGACAGTCATCTGAGCAGCGGCGGTGGTCTCTGAAACTCCCCCATGGTCCCGGCCTGGATAAAGGTTACAGATCCACTCAGCGGCAACAAGCAACACCCTTTCCACCGGCTCTTTAACATCTCCTCAATAACTCGTCAACTATTCTCTCCTCAACATACAGGACAAGTATTAGGCATTCTTTCAGTGGATGTCATCTGGACAGGAAAGGGTTATCTGACAGGAAGTGGAAGTCCTCCTGCCGCCCCATCCTGTGGCTGAAGGCCTGTGAGCCAGGAACCCCAGCACCCCccacctctctctctcctctcctgTTCCTCCGCAGGGCACGGCTGCCCGCTtgtgttttggtaatcttcatcCACCCTGACCTGCTGGCCTGCTCCTGGCGCCAGCAGTCTCAGAGCCCCCAGCACCCCTGATTCCCCTGGCTAATTCAGTCCAGCTGTTGCAAGGTGCCTCTGCCACCCCCACCCGTCACTGCACTTGCCATATCCCTCACAAACGCTAATGTGCTGCCTTTGCGGAAAACACAGAGCGCTTTTCATGCTCTTGTGAGAGGCAGGTATAAGAGGGACCTCGCAGCAGTTATTTGGTGGGTAAAAGAAGTTTGTTCAAGCAGGCTGAGGGGTTTCAGTGCTGCTTTGGCCCAAATTTAGATTAACGTACCACGACAAATCAGCGTGTGCTTTTTACTTGCATTCCATGAGGCTTTCTCTGCCAGTAAAACACACTTAAAAATAGGTTTAAATAGTGTGTACATAGTCTTATGtttcttaaaaacataaaagttCAAGTCTagataaaacaaatgtttattgtttaatttactatgtttaggattatttataaatatatttatctaaGACATTCTCTGGCTTTGAAAATCTGGCTTTCCCtggctatttcttttttttttttttggattttattaggcttttaatattaatgttaaaaagcatCATTTGTCTTGAATTTTAGTGAAAACTTTAGGTATACCTAAAAACAAAACTACTATTTATAAATCAGATGTTTTAAAGtatgtcatttaatttttttatgttttgaacaTTCCATCTAATtggttgtgtttattttttattattattattttttgtatcatTAAATCCAGGACAAAACTGTGCATATtttatgcaacacaggctcagtctgaaaacatagcccaatatacatttctggagatcgtgaattatgtagccagaagtacgtatggctgcattttatctttaaaacaaacactacagggtggtatgacgccgttcctttttttGCTtatcagctgactgcttacctccgtatacacggctttcccgctgttaccagtttgtcctgtagCTCAACATGTATATTGGTGGCCTTGGGAGGCAGAGCAAAGTTGACTTtgacaacagggttcgagtcaggtgaagaatggttctaaaaaatcaggtaaaacaaaaacacaagctaaaaaaataaaataaacgaataaataacagggtgagaaagtggtaaaatctgaaaacatggtaaaaatcagtcaagggcttttcttttttctggattgcttttaaaaacactgtggtTGAGTTTTGGTAAGTGGTAAGGTGGAGGGaacggtcggttggtcagtcagttagtaagtcagtcagtcgacagcggcctctggtggatttacgtga

Function

GO:

id name namespace
GO:0005534 galactose binding molecular_function
GO:0004335 galactokinase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008401 lncRNA upstream 121994 25059462 ~ 25060098 (+) True XLOC_003463
TCONS_00006773 lncRNA upstream 276217 24900479 ~ 24905875 (+) False XLOC_003459
TCONS_00006744 lncRNA upstream 837788 24343328 ~ 24344304 (+) False XLOC_003446
TCONS_00006743 lncRNA upstream 838076 24343010 ~ 24344016 (+) False XLOC_003446
TCONS_00006741 lncRNA upstream 838899 24340031 ~ 24343193 (+) False XLOC_003446
TCONS_00008402 lncRNA downstream 28617 25256812 ~ 25258997 (+) False XLOC_003467
TCONS_00008615 lncRNA downstream 28937 25257132 ~ 25258997 (+) False XLOC_003467
TCONS_00006816 lncRNA downstream 252912 25481107 ~ 25482237 (+) False XLOC_003476
TCONS_00006818 lncRNA downstream 252920 25481115 ~ 25482237 (+) True XLOC_003476
TCONS_00006823 lncRNA downstream 319659 25547854 ~ 25548546 (+) True XLOC_003479
TCONS_00006795 mRNA upstream 1762 25157374 ~ 25180330 (+) True XLOC_003465
TCONS_00006794 mRNA upstream 27089 25139495 ~ 25155003 (+) True XLOC_003464
TCONS_00006790 mRNA upstream 41667 25111846 ~ 25140425 (+) False XLOC_003464
TCONS_00006797 mRNA downstream 28827 25257022 ~ 25266024 (+) False XLOC_003467
TCONS_00006798 mRNA downstream 30863 25259058 ~ 25266235 (+) True XLOC_003467
TCONS_00006799 mRNA downstream 48553 25276748 ~ 25291709 (+) False XLOC_003468
TCONS_00006800 mRNA downstream 50577 25278772 ~ 25289177 (+) True XLOC_003468
TCONS_00006801 mRNA downstream 68171 25296366 ~ 25311677 (+) False XLOC_003469
TCONS_00006788 other upstream 54230 25096197 ~ 25127862 (+) False XLOC_003464
TCONS_00006785 other upstream 141455 25038273 ~ 25040637 (+) True XLOC_003461
TCONS_00006784 other upstream 150846 25010538 ~ 25031246 (+) False XLOC_003461
TCONS_00006782 other upstream 156500 25009643 ~ 25025592 (+) False XLOC_003461
TCONS_00006781 other upstream 156595 24994733 ~ 25025497 (+) False XLOC_003461
TCONS_00006802 other downstream 68181 25296376 ~ 25302557 (+) False XLOC_003469
TCONS_00006814 other downstream 249548 25477743 ~ 25478418 (+) True XLOC_003475
TCONS_00006817 other downstream 252912 25481107 ~ 25482970 (+) False XLOC_003476
TCONS_00006838 other downstream 849752 26077947 ~ 26078061 (+) True XLOC_003488
TCONS_00006853 other downstream 1376416 26604611 ~ 26614587 (+) False XLOC_003495

Expression Profile

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