RNA id: TCONS_00006796


Basic Information

Item Value
RNA id TCONS_00006796
length 481
lncRNA type antisense
GC content 0.53
exon number 3
gene id XLOC_003466
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 25181857 ~ 25228195 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTACACACGCCTATCCCAAATGACAAGTACTCACAGAATTCACGTTGaGTTTTATTTTGTCTTCAACATCGACAGTCATCTGAGCAGCGGCGGTGGTCTCTGAAACTCCCCCATGGTCCCGGCCTGGATAAAGGTTACAGATCCACTCAGCGGCAACAAGCAACACCCTTTCCACCGGCTCTTTAACATCTCCTCAATAACTCGTCAACTATTCTCTCCTCAACATACAGGACAAGTATTAGGCATTCTTTCAGTGGATGTCATCTGGACAGGAAAGGGTTATCTGACAGGAAGTGGAAGTCCTCCTGCCGCCCCATCCTGTGGCTGAAGGCCTGTGAGCCAGGAACCCCAGCACCCCccacctctctctctcctctcctgTTCCTCCGCAGGGCACGGCTGCCCGCTtgtgttttggtaatcttcatcCACCCTGACCTGCTGGCCTGCTCCTGGCGCCAGCAGTCTCAGAGCCCCCAG

Function

GO:

id name namespace
GO:0005534 galactose binding molecular_function
GO:0004335 galactokinase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000171637

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008612 lncRNA upstream 23263 25181857 ~ 25189277 (+) False XLOC_003466
TCONS_00008401 lncRNA upstream 152442 25059462 ~ 25060098 (+) True XLOC_003463
TCONS_00006773 lncRNA upstream 306665 24900479 ~ 24905875 (+) False XLOC_003459
TCONS_00006744 lncRNA upstream 868236 24343328 ~ 24344304 (+) False XLOC_003446
TCONS_00006743 lncRNA upstream 868524 24343010 ~ 24344016 (+) False XLOC_003446
TCONS_00008402 lncRNA downstream 29886 25256812 ~ 25258997 (+) False XLOC_003467
TCONS_00008615 lncRNA downstream 30206 25257132 ~ 25258997 (+) False XLOC_003467
TCONS_00006816 lncRNA downstream 254181 25481107 ~ 25482237 (+) False XLOC_003476
TCONS_00006818 lncRNA downstream 254189 25481115 ~ 25482237 (+) True XLOC_003476
TCONS_00006823 lncRNA downstream 320928 25547854 ~ 25548546 (+) True XLOC_003479
TCONS_00006795 mRNA upstream 32210 25157374 ~ 25180330 (+) True XLOC_003465
TCONS_00006794 mRNA upstream 57537 25139495 ~ 25155003 (+) True XLOC_003464
TCONS_00006790 mRNA upstream 72115 25111846 ~ 25140425 (+) False XLOC_003464
TCONS_00006797 mRNA downstream 30096 25257022 ~ 25266024 (+) False XLOC_003467
TCONS_00006798 mRNA downstream 32132 25259058 ~ 25266235 (+) True XLOC_003467
TCONS_00006799 mRNA downstream 49822 25276748 ~ 25291709 (+) False XLOC_003468
TCONS_00006800 mRNA downstream 51846 25278772 ~ 25289177 (+) True XLOC_003468
TCONS_00006801 mRNA downstream 69440 25296366 ~ 25311677 (+) False XLOC_003469
TCONS_00006788 other upstream 84678 25096197 ~ 25127862 (+) False XLOC_003464
TCONS_00006785 other upstream 171903 25038273 ~ 25040637 (+) True XLOC_003461
TCONS_00006784 other upstream 181294 25010538 ~ 25031246 (+) False XLOC_003461
TCONS_00006782 other upstream 186948 25009643 ~ 25025592 (+) False XLOC_003461
TCONS_00006781 other upstream 187043 24994733 ~ 25025497 (+) False XLOC_003461
TCONS_00006802 other downstream 69450 25296376 ~ 25302557 (+) False XLOC_003469
TCONS_00006814 other downstream 250817 25477743 ~ 25478418 (+) True XLOC_003475
TCONS_00006817 other downstream 254181 25481107 ~ 25482970 (+) False XLOC_003476
TCONS_00006838 other downstream 851021 26077947 ~ 26078061 (+) True XLOC_003488
TCONS_00006853 other downstream 1377685 26604611 ~ 26614587 (+) False XLOC_003495

Expression Profile

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