RNA id: TCONS_00008402


Basic Information

Item Value
RNA id TCONS_00008402
length 1800
lncRNA type read_through
GC content 0.33
exon number 2
gene id XLOC_003467
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 25256812 ~ 25266235 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGGAAAGACCGAGGCATGCTGAACTCTGAAGTTGATCAGTCCACTCCAGTTACTTTCAGTGATGGAAAAACTAAATCCTCCACTCTCAGATAGTCCCAGAAATGCAACGACGATCCAATCCGTGCTTCTCGTAACGTGAACGCTGATGTGAAATGCACTACAATTAGTGAGcctgtacttatttaaaatagccTGACAGTCTAGTAAGTGGGTTTACGTCCATTTGGACCCGCCCAAAAGAGCAGCCAACAGACATCGCTGTCGTCAGTGTTTCATTTAATTACCCAGCACTTGACTGCTGCCTAGGTGTGAATGTTCCGAAGCGCACTTCGCAGATGTCAGCGTGAGTCTGGAATGAGCTTGGTTTAAGTGGTTCGTGAAAGTACAACTTTGAATTTGGCTCCCCCTTGTGGTGAGTAAGTTATTTTACGTTGTTTTACGTACAAATAAGAGCACtgcattttattcatgtttaagttacaaaaaatacattagcgtgtaagcattaataaataaataattaaaaattagccATTTAACTTTGATAAAGTAATGATTTTGCTTTTCAACATAACAATGGTACAAGTAGCCTACAGCAGTTTGTGTTAGACATTCAGATGCATAAGTGCTTTTGAGcaaaggcaaaaataaaagaaaattgtaAACCAAATTTAGTAAGACACTGAGTActctaaaaaaaataccaagtttGTCTAAATTTAACCTAAAACGTTGTcttgtatttaataaatgtatttttaaattgcatCAGATGTGTTGCTTTTGTCACATCCAGTATGATGATTTAATACgattaaaataacaatttatttcaGTGGTCAGAAGTCAAAATCTAATTAacttttataaatagttttgtatTCATCATAATATTTGtctattaaataaaagtttgtcgTCAATTACATTTGCTAAAAACACTTTTTTCCAtgtaaaaaatacatgtaaaaaaaaaatcacaaattaaaAAGGTATGGTTGCGTGTTAAATTTATTATATCTAATTTCCGGTTAATAAGGTCACATTAATCACTTCAGGCaactaaaatattcattcattcaataattttttttcacatataACCAACTGTCTAACAACCTGGTCACAGGCAAACAAAACAACACTTAAACCCATAGAGTCACtttacaaacaattaaaatacTGGATAAAAAGCCTCTAAGACATCATCAttgtaacattttacaaaaacataaattGTTAAGCTGGAAAAATGTCATTAAGTGTTCAAACATTTGTCTGATGTATAAAATCATTCATGGTCTGTCATCCCCACCTCTCAGTCAGTTTGTAAACGTCAGGAACACACAGAGCAACACGAGGGGCAGCCCGAGGAGACTGTATTGTCCCACTCCAAAAAAGTACTTTTGGTCTGGGTGCCTTTTCAGTTACAGCTGCACAGGAGTGGAATTCTGTCCCTGGCAGCATCAGAGCTATAAAAGCCTTATAtgttcaaaaaacatttaaaagtctgGTTTAATCAGACGTACCATGATTCCTATTAGAATTAACCTAGCATGTTTCCATTTGTGCCATCTTAATgatttgttgtttaaatgtgtttcaactatttttatctctattacaaaatgttggggttttagtttaatttgtatatattattttttatcaacATCTACATAACTATGTATATTTTAGTGCTTCTTAACTATGTTTGATTAATTGTATAATtcttgtattgatttttttttaggtttttcaaggacaacagatgaaaaatagacTTCTGGCTAATTCTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008613 lncRNA upstream 28617 25182092 ~ 25228195 (+) False XLOC_003466
TCONS_00008614 lncRNA upstream 28617 25211656 ~ 25228195 (+) False XLOC_003466
TCONS_00006796 lncRNA upstream 29886 25212540 ~ 25226926 (+) True XLOC_003466
TCONS_00008612 lncRNA upstream 67535 25181857 ~ 25189277 (+) False XLOC_003466
TCONS_00008401 lncRNA upstream 196714 25059462 ~ 25060098 (+) True XLOC_003463
TCONS_00006816 lncRNA downstream 222110 25481107 ~ 25482237 (+) False XLOC_003476
TCONS_00006818 lncRNA downstream 222118 25481115 ~ 25482237 (+) True XLOC_003476
TCONS_00006823 lncRNA downstream 288857 25547854 ~ 25548546 (+) True XLOC_003479
TCONS_00008616 lncRNA downstream 570373 25829370 ~ 25830337 (+) True XLOC_003487
TCONS_00008617 lncRNA downstream 929520 26188517 ~ 26196145 (+) True XLOC_003489
TCONS_00006795 mRNA upstream 76482 25157374 ~ 25180330 (+) True XLOC_003465
TCONS_00006794 mRNA upstream 101809 25139495 ~ 25155003 (+) True XLOC_003464
TCONS_00006790 mRNA upstream 116387 25111846 ~ 25140425 (+) False XLOC_003464
TCONS_00006798 mRNA downstream 61 25259058 ~ 25266235 (+) True XLOC_003467
TCONS_00006799 mRNA downstream 17751 25276748 ~ 25291709 (+) False XLOC_003468
TCONS_00006800 mRNA downstream 19775 25278772 ~ 25289177 (+) True XLOC_003468
TCONS_00006801 mRNA downstream 37369 25296366 ~ 25311677 (+) False XLOC_003469
TCONS_00006803 mRNA downstream 44842 25303839 ~ 25310706 (+) True XLOC_003469
TCONS_00006788 other upstream 128950 25096197 ~ 25127862 (+) False XLOC_003464
TCONS_00006785 other upstream 216175 25038273 ~ 25040637 (+) True XLOC_003461
TCONS_00006784 other upstream 225566 25010538 ~ 25031246 (+) False XLOC_003461
TCONS_00006782 other upstream 231220 25009643 ~ 25025592 (+) False XLOC_003461
TCONS_00006781 other upstream 231315 24994733 ~ 25025497 (+) False XLOC_003461
TCONS_00006802 other downstream 37379 25296376 ~ 25302557 (+) False XLOC_003469
TCONS_00006814 other downstream 218746 25477743 ~ 25478418 (+) True XLOC_003475
TCONS_00006817 other downstream 222110 25481107 ~ 25482970 (+) False XLOC_003476
TCONS_00006838 other downstream 818950 26077947 ~ 26078061 (+) True XLOC_003488
TCONS_00006853 other downstream 1345614 26604611 ~ 26614587 (+) False XLOC_003495

Expression Profile

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