RNA id: TCONS_00006826


Basic Information

Item Value
RNA id TCONS_00006826
length 3579
RNA type mRNA
GC content 0.45
exon number 16
gene id XLOC_003480
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 25560072 ~ 25576199 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGACACAGAGGAAGTAGCAGCTGAAGCACCTGCAGAAACAGCAACCGAGGAAAAAGATGCAACTTCAGAGGAAAACAAAGAGTCCACGACAAGCACAGACATCCAGGATCATGTCACGGACAAAAACCAAGAGGAAGATGCAGCTGCAAAGGAAGACGAAGAAGCTGTTATTGACAAGGAAGCTGAAGAAGCTGTAATTCAGAAAAAAGATGAAGAAGCAGTAGTTCAGAAGGAAGGTGAAGAAGCTATAATTCAGAAGGAAGGTGAAGAAACTATAGCCGAGAAAGAAGGTGAAGAAACTGTAACCGAGAAAGAAGGTGAAGATGCTGTAACAGAGAAAGAAGGTGAAGAAGCTGAAACCGAAAAAGAAGGTGAAGATGCTGTAACCGAAAAAGAAGGTGAAGATGCTGTAACCGAAAAAGAAGGTAAAGATGCAGTAACCGAGAAAGAAGGTGAAGAAGCTGAAACTGAGAATAAAGGTGAAGAAGCTGAAACGGAGAATAAAGGTGAAGAAGCAGTACTCGAGAAGCAAGATGAATCTTCTAAAGATGTTGACAATCCTTCTTGTGACTGGTTGGAGCCACTTGAAGAAGATTGTGAAGATGTTGATTCTCAGAGCGTCGATGGAGAAGTTGAGAGCGTTGCGGGGAGCGAGTTTAGTGGGAGTGTAGTTCTGAAAAGCACTGGAGACAGAGGTGGAAGAGGTGCTGGGAGAGCTAGAAGGAAAACACAGTTCGAGGCTGATGAAGGCTGGGAAGATTGGCCGGCATTGGGTAAAGGATGGAAACGCAAGGAGGTTTTTCGCCGATCGGGCACCAGTGAAGGACGCAGTGATACATATTATATAAGtcCAAGAGGTCGTAAAGTAAGAAGCAGAGTTGAGCTTACAAAACACATTGGCCATTCTGTGGACCTGacaaattttgattttaaatcaGGCCAGTTTCTTGGAGAAGGGGCTCGAAGAAAACCTAGAGTGAGAAGGAAAATGGAATCTCCTCTAGCACAACCTGAAACCTCCCTTACACTCAGTGTTCGAAGCGATTCGGCAGATGTCCAGCGACCAGCGTCTTCAGCAGGTTTCGCTACTGCTCAAAAAAAGAGCTTGCATTCAACTCAGAATCCTCCATATGCCACCACTGCATCGAACCTCAGTACCTTTGTGAGTCCTGGGACAAATAAGTCTTCATTAAGTGCCACTACTCAGCCTGTTGTTGATCTGACAGAAGATGCTGCAAATCCAACTCCTCCTGTAGTGTCTGTAGCCTCAGAGAAACCTGTCAATGGTGCCAGTGGAGGTCCTAGACGTTTGTTTGGAGTCTGCATTAGATGTAATAAAACCTATTCTTATGAAGAAGGACAAACTTTGTGCAAGGACTGCAGGATAGAGAATAGAGCATTGGCAAGCAGAAAACCATACAAAAAGTGGGTTCCATGTGGTCGATGCTGGGCTTGTCAAACAACAGTGGACTGTGGGAAATGCGTTAGCTGCAGAAATGGCCGGCTGCGCCATCGACTTAATATCCACTCTCGTAAAGTTGTTAAATGTCGCAAACGGAAATGTTTACACCCTGTTCGTAGGGAGAGGGGTTTTAAGGATTCAGAGGGGCAGTTTTCAAACATGGAATCTTCAATGAGCACAGAACCCTCAGTCTCAGAAGATTATGACGAATCACAGAGCTCTTATTTGCAGTACAGTGACTCAGAGGATTTGTCTGTGTTCTTTGAGGGTAATGATGGTGACAATGGCCTGGATGAGATGGGTGTACCAAAGGTGCGTCGCCGTTCATGTGGAAAGTGTAAAGGCTGTGTTCGTCGTACAGACTGTGGAACCTGTGACTTTTGCATGGACAAACCCAAGTTTGGaggcagaaataaaaaaagacagaaatgCCGTCTACGACAATGCACGCGAGAGGCAATGAAGCATTTGTTGCCAATGGATGAGGCAGAGCTGCTTGCTCAGGGCTGGTTGCCCCGCCGCAGGCCGCGGTACACATATGGACGAGGTACACCCGGGTCCAAGAAGATGTGGGGTTTTGAGATGTCAGATGATATGCCTGAACAGTACATGCAGAAAAATTCAGCTCACCTGATGAATCAAGACCGATTCCTGCACCCCAGTTACAATGGAAAGATGAAGGCCTACAGTTATACTGATGTGCCAAACAGTCATATGGTGAACAACATGCCACTCTATAATCCACACAAAGTTGAGACGATGAGTCCTCATGTGCGAACTGGACAGGCGGAGATGATCAAAGAAAATGGGCTTCAGAGCATCAGTAACAGAAGCTTTGTGGCTAGGAGACCTGACGTTCCTCCTACCACTCAGTTTGACAGCACTGGAAATCCAGGCTCTAAAACTGAAAGAAACCGATCGCAGGATGAACAATCAGAGGGCGAGTCTTTCCCATCGATCACTCAGATATTCAGCGTGGCAGGCAGCGACCACGCCGTCCAGGGCATGGACGTAAATCACGAACTGATGCCGCTCTTGAGATCTCTACGCAGTATAGTCCTCCCAGTTCTCTGGTTCTGCGTGGTGGTGGAAGGGCCGCGGTTACAGCTGCTGCAGTGCTCCAAACGCTCCACCATGGCGGATACCGTCATCTACATCGAGCCCGGCTTTCACTACCACATCAGCGTCCAGGACCAGCCGCTGCTGCCCACACACAAACTCTACGACTGCCACCCGTCTCGCCTCACCAGCGCGGCTGAGATCATCGCCCTCATCGAGGATCTGGAGAAGCACTCCGTCTGCCAAGGCTCAGAGCACAAACACAGCTCAGACCTGGTGATTCCCGAACGGGCGGCTACTTGTGACTTCCTTATTTCAGCAGAGGTAGAACGCTGTGAGAAATGCCAGACTTTACAAAGGGcgtagagagaaagagaaagctgGAAATTGCTCTTatgtgatacatttttttaatttctgactTTGTATTCCAGCTCATTTGTGTGATTGAAATATTTTCTTACTCTAATATAAAATTATTGGAGTGTTTTGTTTGTCCTCAGATGAATTCATTGACTTGCGACTCAATTTTTGGTTGCTTTACTTGACAAACTTCCTATATTAATAAGCGACCACTaagcaaaacataatttttttaacccTTGAGTATGTGATGCATCATGGTACTACACATTGCACATCATTGAGGTAGTTAACGGGCCTGTTTGACCATTGAGCAGTTTAACTGTACATCATGCCTCGCACTAAACACTAAAGTGCTTCATATCCATTTTGGTTGAATTCCCTGCACCAATGATTCATGTTTAATGTTTATGTACTTCTCAGGGGGGATTTTTCAGAATGCATTAATCAGATGGAAGATCCATGTTTGTTTCATATTTGCTGTATGATGCGCGGTGGGGCTGAAACATGATTTTGTACATAATTCAAGCGGTGGCAGAGAATTAGGATCCAATATAGCCCGAATGTTTTTATAAACGTGTTGTTTTTTCCAAAATTTCAGTTTCCTCTGTTACAAAACACTTTAAATCGTTTGTATGTGATTTCATATGGATATTctcaattttgtttatttaataaatcatattatcTGTT

Function

GO:

id name namespace
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6318 Predicted to enable DNA binding activity and zinc ion binding activity. Predicted to be located in nucleus. Human ortholog(s) of this gene implicated in lung cancer. Orthologous to human MBD1 (methyl-CpG binding domain protein 1).

Ensembl:

ensembl_id ENSDART00000033914

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006823 lncRNA upstream 12086 25547854 ~ 25548546 (+) True XLOC_003479
TCONS_00006816 lncRNA upstream 78395 25481107 ~ 25482237 (+) False XLOC_003476
TCONS_00006818 lncRNA upstream 78395 25481115 ~ 25482237 (+) True XLOC_003476
TCONS_00008402 lncRNA upstream 301635 25256812 ~ 25258997 (+) False XLOC_003467
TCONS_00008616 lncRNA downstream 253172 25829370 ~ 25830337 (+) True XLOC_003487
TCONS_00008617 lncRNA downstream 612319 26188517 ~ 26196145 (+) True XLOC_003489
TCONS_00008618 lncRNA downstream 649884 26226082 ~ 26234069 (+) True XLOC_003490
TCONS_00006845 lncRNA downstream 819715 26395913 ~ 26398030 (+) False XLOC_003492
TCONS_00006846 lncRNA downstream 820441 26396639 ~ 26398487 (+) True XLOC_003492
TCONS_00006822 mRNA upstream 9787 25539698 ~ 25550845 (+) False XLOC_003479
TCONS_00006820 mRNA upstream 40795 25504215 ~ 25519837 (+) False XLOC_003478
TCONS_00006821 mRNA upstream 40971 25508129 ~ 25519661 (+) True XLOC_003478
TCONS_00006819 mRNA upstream 58141 25485774 ~ 25502491 (+) True XLOC_003477
TCONS_00006815 mRNA upstream 77426 25481046 ~ 25483206 (+) False XLOC_003476
TCONS_00006827 mRNA downstream 7752 25583950 ~ 25615084 (+) False XLOC_003481
TCONS_00006828 mRNA downstream 19840 25596038 ~ 25618583 (+) True XLOC_003481
TCONS_00006829 mRNA downstream 43694 25619892 ~ 25624972 (+) False XLOC_003482
TCONS_00006830 mRNA downstream 43734 25619932 ~ 25631442 (+) True XLOC_003482
TCONS_00006831 mRNA downstream 57843 25634041 ~ 25679133 (+) False XLOC_003483
TCONS_00006817 other upstream 77662 25481107 ~ 25482970 (+) False XLOC_003476
TCONS_00006814 other upstream 82214 25477743 ~ 25478418 (+) True XLOC_003475
TCONS_00006802 other upstream 258075 25296376 ~ 25302557 (+) False XLOC_003469
TCONS_00006788 other upstream 432770 25096197 ~ 25127862 (+) False XLOC_003464
TCONS_00006785 other upstream 519995 25038273 ~ 25040637 (+) True XLOC_003461
TCONS_00006838 other downstream 501749 26077947 ~ 26078061 (+) True XLOC_003488
TCONS_00006853 other downstream 1028413 26604611 ~ 26614587 (+) False XLOC_003495
TCONS_00006865 other downstream 1944258 27520456 ~ 27520573 (+) True XLOC_003503
TCONS_00006890 other downstream 3775903 29352101 ~ 29352221 (+) True XLOC_003521
TCONS_00006893 other downstream 3990549 29566747 ~ 29571528 (+) True XLOC_003523

Expression Profile

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