RNA id: TU248497


Basic Information

Item Value
RNA id TU248497
length 536
lncRNA type inter_gene
GC content 0.53
exon number 3
gene id G183492
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 10216351 ~ 10217126 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GATCCAGAATGTAGTTTCTCTTCTTGCGTGCAGCAATTTCAATAAACTTTCCCAGGAAAAGTGGTGCTCTCTGGGAAATGGCGGTCAGTTTCGTAATGTCCTTGGACTGTCGTTTCAGGCTGTTTATCATCATCTTGTCCACGATGGTGTCACTGCCCAGGATGTAGTATTTCCCAGGGTTCTCCTGGACATGGTTCTTCACCCACGTAGTCTTCCCTGAGCCTGGAAGGCCGACCATCACTATGATCTCGCAGTCAGCCTTGGTCTGTGGGCCCTTGAGCCCACGGACTCTGTCATCCAAAGGTATCTGCTGCAGGAAGGTGTAGCCCTGAGGCTGAGGGAAGTACGGAGTCTCCATCTGGCCAAAGTTGAACTCCACGGCGCAATTGTGGCAGATGACGTGTGGGAAAAGGGCCTGGCCGTTCAGAGTCTCCTTGTTCATCTGGAAGGCGACAGCCGGCTCGGCGCCATTCTTGGAGAAGGACAACACCACATCCTCGCCCTCAAAGTCCTAAGCAAAGAAAGCGAGACGCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248447 lncRNA downstream 38782 10176900 ~ 10177569 (-) True G183457
TU248448 lncRNA downstream 40996 10174736 ~ 10175355 (-) True G183458
XR_005637025.1 lncRNA downstream 150065 10064593 ~ 10066286 (-) True LOC120547073
TU248365 lncRNA downstream 168119 10047957 ~ 10048232 (-) True G183383
TU248364 lncRNA downstream 170856 10045181 ~ 10045495 (-) True G183382
TU248503 lncRNA upstream 3792 10220918 ~ 10233568 (-) True G183497
TU248537 lncRNA upstream 340361 10557487 ~ 10558119 (-) True G183530
TU248538 lncRNA upstream 348790 10565916 ~ 10566164 (-) True G183531
TU248541 lncRNA upstream 373954 10591080 ~ 10591338 (-) True G183534
TU248626 lncRNA upstream 537870 10754996 ~ 10780282 (-) True G183594
XM_039782756.1 mRNA downstream 8026 10178309 ~ 10208325 (-) True kif26bb
XM_039782754.1 mRNA downstream 42373 10148075 ~ 10173978 (-) True cnstb
XM_039782755.1 mRNA downstream 43029 10148075 ~ 10173322 (-) False cnstb
XM_039782752.1 mRNA downstream 78575 10136000 ~ 10137776 (-) True LOC120547244
XM_039781122.1 mRNA downstream 115299 10099478 ~ 10101052 (-) True LOC120546281
XM_039782751.1 mRNA upstream 9690 10226816 ~ 10229005 (-) True lft1
XM_039782062.1 mRNA upstream 129874 10347000 ~ 10379127 (-) True fzd3a
XM_039782064.1 mRNA upstream 131015 10348141 ~ 10379127 (-) False fzd3a
XM_039782063.1 mRNA upstream 131015 10348141 ~ 10378735 (-) False fzd3a
XM_039782068.1 mRNA upstream 181676 10398802 ~ 10449410 (-) False fam49a
TU248390 other downstream 115290 10099603 ~ 10101061 (-) False LOC120546281
TU248116 other downstream 1082879 9129573 ~ 9133472 (-) True G183176
TU247995 other downstream 1429134 8783788 ~ 8787217 (-) False LOC120546397
TU247804 other downstream 2191307 8024715 ~ 8025044 (-) True G182977
TU247776 other downstream 2449965 7761565 ~ 7766386 (-) True G182952
XR_005636937.1 other upstream 284794 10501920 ~ 10610625 (-) False LOC120546776
TU248535 other upstream 303591 10520717 ~ 10521410 (-) True G183528
TU248695 other upstream 1156982 11374108 ~ 11374615 (-) True G183650
unassigned_transcript_1080 other upstream 2366043 12583169 ~ 12583241 (-) True trnat-ugu_2
TU249125 other upstream 2743372 12960498 ~ 13007868 (-) True LOC120547209

Expression Profile