RNA id: TCONS_00073295


Basic Information

Item Value
RNA id TCONS_00073295
length 778
lncRNA type retained_intron
GC content 0.43
exon number 3
gene id XLOC_037245
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 32069957 ~ 32071430 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCTCAAAACTCAAGCTGAACTCATATCTCTGTTCATTGTGACTTCTGGAGCAGGTGGATTTAGGCTACACTAAAGACAAGTAATGCAACATCAAGCCTACCAACCCGTCGTGCCATGTGTTAATAAATATCTGCAATATCGATGGGACAAAAACTGCTATGAGATACACAGGGACAagGTTAAATCTGCGAAACCCACAATCAACACATCTCCGCCGAAAACCTACAGCCATCTACTTGTCAAGTTGAAGAAAAGCCAGGTAGGATTGCTGATCGACCACCAGATGTCGACTTTTACACTGTTTTGGTAATTGTTAATCCATTTCAGTCTTTCATCTTTCATAAACAGCTTGAAGAAGAACGGGTTTCTAAAATCAAAAGAGAAAACGAAATGCTTCTACATAAAATGTCCCACATAATGCAGACCAAAGGGGGCGttgactgtaaaaatatttatgtgAAGAAAAGGTATACATGCAACTTTTTATAGAATTAacttataattaatttgttaattaacacGTTCATGTTTTTGCTTCAGTCTTGGCTCAGAAAAAAAGACAACTGGAACTGCTCCACATCACCAGAGAGAATCAGCGCATCCTCCAGCGTTTGTCGACCTGCAGGCCGCGTTACAGCGTTCAGGCGTGGCAGGAGCAGTGGCTCAGGCACCTGGAGCTCATGGAGGCCATAGGCAGATATCCGCGTTTCTTCAGCGCACAGGGGTCCTACTTGCCACCTCTGTGAACAGACTATAAGACGATGGATCAGTCGTCTG

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0014809 regulation of skeletal muscle contraction by regulation of release of sequestered calcium ion biological_process
GO:0048468 cell development biological_process
GO:0090257 regulation of muscle system process biological_process
GO:0050879 multicellular organismal movement biological_process
GO:0050881 musculoskeletal movement biological_process
GO:0014819 regulation of skeletal muscle contraction biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0046031 ADP metabolic process biological_process
GO:0006936 muscle contraction biological_process
GO:0006937 regulation of muscle contraction biological_process
GO:0030154 cell differentiation biological_process
GO:0006941 striated muscle contraction biological_process
GO:0006942 regulation of striated muscle contraction biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0045214 sarcomere organization biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0009135 purine nucleoside diphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0003008 system process biological_process
GO:0003009 skeletal muscle contraction biological_process
GO:0009179 purine ribonucleoside diphosphate metabolic process biological_process
GO:0003012 muscle system process biological_process
GO:0030029 actin filament-based process biological_process
GO:0003015 heart process biological_process
GO:0009185 ribonucleoside diphosphate metabolic process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0044057 regulation of system process biological_process
GO:0014722 regulation of skeletal muscle contraction by calcium ion signaling biological_process
GO:0060047 heart contraction biological_process
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0043292 contractile fiber cellular_component
GO:0048770 pigment granule cellular_component
GO:0044430 obsolete cytoskeletal part cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0042470 melanosome cellular_component
GO:0036379 myofilament cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0016528 sarcoplasm cellular_component
GO:0016529 sarcoplasmic reticulum cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0031674 I band cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0030018 Z disc cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0048306 calcium-dependent protein binding molecular_function
GO:0051015 actin filament binding molecular_function
GO:0003779 actin binding molecular_function
GO:0044877 protein-containing complex binding molecular_function
GO:0008092 cytoskeletal protein binding molecular_function
GO:0005372 water transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-603 Orthologous to human CFAP97D1 (CFAP97 domain containing 1).

Ensembl:

ensembl_id ENSDART00000134315

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075154 lncRNA upstream 155495 31913496 ~ 31914462 (+) True XLOC_037243
TCONS_00073286 lncRNA upstream 641223 31347037 ~ 31428734 (+) False XLOC_037238
TCONS_00075153 lncRNA upstream 641223 31416834 ~ 31428734 (+) True XLOC_037238
TCONS_00073287 lncRNA upstream 674268 31347038 ~ 31395689 (+) False XLOC_037238
TCONS_00075152 lncRNA upstream 727348 31329049 ~ 31342609 (+) True XLOC_037237
TCONS_00073308 lncRNA downstream 118006 32189139 ~ 32192519 (+) True XLOC_037248
TCONS_00074917 lncRNA downstream 152562 32223695 ~ 32238109 (+) True XLOC_037249
TCONS_00075155 lncRNA downstream 273750 32344883 ~ 32349025 (+) True XLOC_037252
TCONS_00074918 lncRNA downstream 465613 32536746 ~ 32537384 (+) True XLOC_037254
TCONS_00073321 lncRNA downstream 577943 32649076 ~ 32651437 (+) False XLOC_037255
TCONS_00073293 mRNA upstream 236392 31795343 ~ 31833565 (+) True XLOC_037242
TCONS_00073292 mRNA upstream 259154 31752628 ~ 31810803 (+) False XLOC_037242
TCONS_00073290 mRNA upstream 483001 31556043 ~ 31586956 (+) False XLOC_037241
TCONS_00073289 mRNA upstream 520394 31534601 ~ 31549563 (+) True XLOC_037240
TCONS_00073285 mRNA upstream 782947 31282161 ~ 31287010 (+) False XLOC_037237
TCONS_00073299 mRNA downstream 2473 32073606 ~ 32106034 (+) False XLOC_037246
TCONS_00073298 mRNA downstream 2473 32073606 ~ 32106034 (+) False XLOC_037246
TCONS_00073297 mRNA downstream 2473 32073606 ~ 32106034 (+) False XLOC_037246
TCONS_00073300 mRNA downstream 2590 32073723 ~ 32104413 (+) False XLOC_037246
TCONS_00073301 mRNA downstream 5525 32076658 ~ 32103851 (+) False XLOC_037246
TCONS_00073294 other upstream 76524 31993311 ~ 31993433 (+) True XLOC_037244
TCONS_00073291 other upstream 497278 31566399 ~ 31572679 (+) True XLOC_037241
TCONS_00073288 other upstream 574192 31495648 ~ 31495765 (+) True XLOC_037239
TCONS_00073282 other upstream 903555 31076056 ~ 31166402 (+) False XLOC_037235
TCONS_00073279 other upstream 1054631 30820290 ~ 31015326 (+) False XLOC_037234
TCONS_00073304 other downstream 29070 32100203 ~ 32103807 (+) True XLOC_037246
TCONS_00073307 other downstream 112922 32184055 ~ 32187252 (+) True XLOC_037247
TCONS_00073322 other downstream 577943 32649076 ~ 32652072 (+) False XLOC_037255
TCONS_00073333 other downstream 1003547 33074680 ~ 33082181 (+) True XLOC_037261
TCONS_00073341 other downstream 1109549 33180682 ~ 33181352 (+) True XLOC_037264

Expression Profile

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