Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00073321 |
| length | 663 |
| lncRNA type | retained_intron |
| GC content | 0.44 |
| exon number | 5 |
| gene id | XLOC_037255 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007120.7 |
| NCBI id | CM002893.2 |
| chromosome length | 56459846 |
| location | 32635546 ~ 32670526 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006886 | intracellular protein transport | biological_process |
| GO:0046578 | regulation of Ras protein signal transduction | biological_process |
| GO:0001779 | natural killer cell differentiation | biological_process |
| GO:0030183 | B cell differentiation | biological_process |
| GO:0006508 | proteolysis | biological_process |
| GO:1903059 | regulation of protein lipidation | biological_process |
| GO:0033077 | T cell differentiation in thymus | biological_process |
| GO:0012505 | endomembrane system | cellular_component |
| GO:0003924 | GTPase activity | molecular_function |
| GO:0005525 | GTP binding | molecular_function |
| GO:0004252 | serine-type endopeptidase activity | molecular_function |
| GO:0042803 | protein homodimerization activity | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| id | description |
|---|---|
| ko04031 | GTP-binding proteins |
| id | description |
|---|---|
| ZDB-GENE-040808-11 | Predicted to enable GTP binding activity; GTPase activity; and protein homodimerization activity. Predicted to be involved in several processes, including lymphocyte differentiation; regulation of Ras protein signal transduction; and regulation of protein lipidation. Predicted to act upstream of or within proteolysis. Predicted to be active in endomembrane system. Human ortholog(s) of this gene implicated in pancreatic cancer. Orthologous to human RABL3 (RAB, member of RAS oncogene family like 3). |
| ensembl_id | ENSDART00000144535 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00074918 | lncRNA | upstream | 111692 | 32536746 ~ 32537384 (+) | True | XLOC_037254 |
| TCONS_00075155 | lncRNA | upstream | 300051 | 32344883 ~ 32349025 (+) | True | XLOC_037252 |
| TCONS_00074917 | lncRNA | upstream | 410967 | 32223695 ~ 32238109 (+) | True | XLOC_037249 |
| TCONS_00073308 | lncRNA | upstream | 456557 | 32189139 ~ 32192519 (+) | True | XLOC_037248 |
| TCONS_00073295 | lncRNA | upstream | 577943 | 32069957 ~ 32071133 (+) | False | XLOC_037245 |
| TCONS_00075156 | lncRNA | downstream | 240460 | 32891897 ~ 32895100 (+) | True | XLOC_037257 |
| TCONS_00073335 | lncRNA | downstream | 494148 | 33145585 ~ 33147007 (+) | False | XLOC_037262 |
| TCONS_00073336 | lncRNA | downstream | 494635 | 33146072 ~ 33147664 (+) | True | XLOC_037262 |
| TCONS_00075157 | lncRNA | downstream | 1075246 | 33726683 ~ 33742935 (+) | False | XLOC_037276 |
| TCONS_00075158 | lncRNA | downstream | 1075257 | 33726694 ~ 33742935 (+) | False | XLOC_037276 |
| TCONS_00073319 | mRNA | upstream | 191742 | 32431666 ~ 32457334 (+) | True | XLOC_037253 |
| TCONS_00073317 | mRNA | upstream | 191872 | 32428679 ~ 32457204 (+) | False | XLOC_037253 |
| TCONS_00073318 | mRNA | upstream | 191872 | 32428682 ~ 32457204 (+) | False | XLOC_037253 |
| TCONS_00073316 | mRNA | upstream | 191933 | 32358514 ~ 32457143 (+) | False | XLOC_037253 |
| TCONS_00073315 | mRNA | upstream | 336214 | 32306862 ~ 32312862 (+) | True | XLOC_037251 |
| TCONS_00073326 | mRNA | downstream | 208530 | 32859967 ~ 32874304 (+) | False | XLOC_037256 |
| TCONS_00073327 | mRNA | downstream | 208908 | 32860345 ~ 32875568 (+) | False | XLOC_037256 |
| TCONS_00073328 | mRNA | downstream | 221253 | 32872690 ~ 32875568 (+) | True | XLOC_037256 |
| TCONS_00073329 | mRNA | downstream | 279185 | 32930622 ~ 32946439 (+) | False | XLOC_037258 |
| TCONS_00073330 | mRNA | downstream | 280188 | 32931625 ~ 32941616 (+) | True | XLOC_037258 |
| TCONS_00073307 | other | upstream | 461824 | 32184055 ~ 32187252 (+) | True | XLOC_037247 |
| TCONS_00073304 | other | upstream | 545269 | 32100203 ~ 32103807 (+) | True | XLOC_037246 |
| TCONS_00073294 | other | upstream | 655643 | 31993311 ~ 31993433 (+) | True | XLOC_037244 |
| TCONS_00073291 | other | upstream | 1076397 | 31566399 ~ 31572679 (+) | True | XLOC_037241 |
| TCONS_00073288 | other | upstream | 1153311 | 31495648 ~ 31495765 (+) | True | XLOC_037239 |
| TCONS_00073333 | other | downstream | 423243 | 33074680 ~ 33082181 (+) | True | XLOC_037261 |
| TCONS_00073341 | other | downstream | 529245 | 33180682 ~ 33181352 (+) | True | XLOC_037264 |
| TCONS_00073351 | other | downstream | 592761 | 33244198 ~ 33245755 (+) | True | XLOC_037270 |
| TCONS_00073362 | other | downstream | 1159009 | 33810446 ~ 33836470 (+) | True | XLOC_037278 |
| TCONS_00073383 | other | downstream | 1774291 | 34425728 ~ 34429112 (+) | False | XLOC_037290 |
