RNA id: TCONS_00073325


Basic Information

Item Value
RNA id TCONS_00073325
length 517
lncRNA type retained_intron
GC content 0.37
exon number 2
gene id XLOC_037255
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 32635546 ~ 32670526 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACCTTCTTTGCCAGAATCAGGTTTTGGGGAATCCCTCATGGACTGTGGGCTGCTCAGTGGACGTCAGGGTTCATGACTACAGAGAAGGCACTCCAGAAGAGAAGGCTTTCTACATTGAACTCTGGGATGTTGGAGGATCTGTTGGCAGTGCCAGCAGTGTTAAAAGCACCAGAGCTGTGTTTTACAATTCAGTTAATGGTTAAGTATTAGtgttcccctttgaacacaatatattttattacgagaaacttttaaaatatattgttacaGTAAacttgtcaggctaaataattcaaatgaatcttggacttctgctgtcttcattagtttcaaaaacacagatttgattacaatttaaaacggcatcatttgagatcttttctgctggagatactgttgtcctaaaaaaattaaaacgaaaataaaacatcttaaatatacaataggaacggtatagcagaaaattagggtggttttaaaaccgcgacttttccaaaccacagtataccttgaaaa

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0046578 regulation of Ras protein signal transduction biological_process
GO:0001779 natural killer cell differentiation biological_process
GO:0030183 B cell differentiation biological_process
GO:0006508 proteolysis biological_process
GO:1903059 regulation of protein lipidation biological_process
GO:0033077 T cell differentiation in thymus biological_process
GO:0012505 endomembrane system cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0042803 protein homodimerization activity molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
ko04031 GTP-binding proteins

ZFIN:

id description
ZDB-GENE-040808-11 Predicted to enable GTP binding activity; GTPase activity; and protein homodimerization activity. Predicted to be involved in several processes, including lymphocyte differentiation; regulation of Ras protein signal transduction; and regulation of protein lipidation. Predicted to act upstream of or within proteolysis. Predicted to be active in endomembrane system. Human ortholog(s) of this gene implicated in pancreatic cancer. Orthologous to human RABL3 (RAB, member of RAS oncogene family like 3).

Ensembl:

ensembl_id ENSDART00000134743

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00074918 lncRNA upstream 112123 32536746 ~ 32537384 (+) True XLOC_037254
TCONS_00075155 lncRNA upstream 300482 32344883 ~ 32349025 (+) True XLOC_037252
TCONS_00074917 lncRNA upstream 411398 32223695 ~ 32238109 (+) True XLOC_037249
TCONS_00073308 lncRNA upstream 456988 32189139 ~ 32192519 (+) True XLOC_037248
TCONS_00073295 lncRNA upstream 578374 32069957 ~ 32071133 (+) False XLOC_037245
TCONS_00075156 lncRNA downstream 241793 32891897 ~ 32895100 (+) True XLOC_037257
TCONS_00073335 lncRNA downstream 495481 33145585 ~ 33147007 (+) False XLOC_037262
TCONS_00073336 lncRNA downstream 495968 33146072 ~ 33147664 (+) True XLOC_037262
TCONS_00075157 lncRNA downstream 1076579 33726683 ~ 33742935 (+) False XLOC_037276
TCONS_00075158 lncRNA downstream 1076590 33726694 ~ 33742935 (+) False XLOC_037276
TCONS_00073319 mRNA upstream 192173 32431666 ~ 32457334 (+) True XLOC_037253
TCONS_00073317 mRNA upstream 192303 32428679 ~ 32457204 (+) False XLOC_037253
TCONS_00073318 mRNA upstream 192303 32428682 ~ 32457204 (+) False XLOC_037253
TCONS_00073316 mRNA upstream 192364 32358514 ~ 32457143 (+) False XLOC_037253
TCONS_00073315 mRNA upstream 336645 32306862 ~ 32312862 (+) True XLOC_037251
TCONS_00073326 mRNA downstream 209863 32859967 ~ 32874304 (+) False XLOC_037256
TCONS_00073327 mRNA downstream 210241 32860345 ~ 32875568 (+) False XLOC_037256
TCONS_00073328 mRNA downstream 222586 32872690 ~ 32875568 (+) True XLOC_037256
TCONS_00073329 mRNA downstream 280518 32930622 ~ 32946439 (+) False XLOC_037258
TCONS_00073330 mRNA downstream 281521 32931625 ~ 32941616 (+) True XLOC_037258
TCONS_00073307 other upstream 462255 32184055 ~ 32187252 (+) True XLOC_037247
TCONS_00073304 other upstream 545700 32100203 ~ 32103807 (+) True XLOC_037246
TCONS_00073294 other upstream 656074 31993311 ~ 31993433 (+) True XLOC_037244
TCONS_00073291 other upstream 1076828 31566399 ~ 31572679 (+) True XLOC_037241
TCONS_00073288 other upstream 1153742 31495648 ~ 31495765 (+) True XLOC_037239
TCONS_00073333 other downstream 424576 33074680 ~ 33082181 (+) True XLOC_037261
TCONS_00073341 other downstream 530578 33180682 ~ 33181352 (+) True XLOC_037264
TCONS_00073351 other downstream 594094 33244198 ~ 33245755 (+) True XLOC_037270
TCONS_00073362 other downstream 1160342 33810446 ~ 33836470 (+) True XLOC_037278
TCONS_00073383 other downstream 1775624 34425728 ~ 34429112 (+) False XLOC_037290

Expression Profile

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