RNA id: TCONS_00073328


Basic Information

Item Value
RNA id TCONS_00073328
length 2654
RNA type mRNA
GC content 0.45
exon number 2
gene id XLOC_037256
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 32859967 ~ 32875568 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGTAGCATGGCACGTGTGGGTGAGCTTGATGTAGAAGGTCGGAGTCCTCTAATTCTGGCAGCACAAGAAGGCCATTGCAGTACAGTCAGGTTACTGCTAGATCGTAAATCACCCATTGATCATCGTGCATATGATGGACACTCTGCACTTAGTGCGGCtgctctgcagggacaccgagaTATTGTAGAGCTGTTAATGCGCAGAGGAGCTGACACTGATGTCCGTGATGCTGAAGGAAGACCTCTCCTTTATTtgctggtcctggagggccgtttaGACATGGCTACCCTACTTATAGAAAAAGGCGGTGTTCCTCTGGAGTCAAAAGATGCAGAGGGACGAACTGCACTCCATGTAGCCGCTTGGCGAGGAGATCTGGAAGGTACTGAACTATTGCTAAAATATGGAGCTGACCCAAATGCTAGAGATCTTGATGGGCGGCCTCCTTTGCACTCAGTGGCGTGGAGAGGTCATACAGCTGCTGGCAGGCTGCTCCTTAGGGCTAAAGGTCTCAATGTAGATCTGGCTTGCAAACAGCAGGGTGCCACAGCACTAAGTGTTGCTGCTCAGGAGGGGCATAGTGAAATTGTGGTCATGCTCTTAGAGAAAGGTGCTAACCCTGACCATGTGGACCGTTATGGTCGCACCCCAGTGAAGGTAGCAGGAAAACAAAGTCATTTCACAATTGTCAGACTTCTGGAGAGCTATGGCGCCAAACCCTTCTCAGGTTTAATACCATTCACACCTAGTGGTGCTCCTAATGCATCTTATCTTTCAGGCATAGTGAAGACCCATCCGTCCATTAGTTCAGGAGAGGTGGCAGCTGATCGAGTCCCCACTGTATCTTCTCCATCGTCAACATCAGCCTCCTGTTCCCCTGCGTCTACTGCAGAGCGTTTCCACTCAATGCCTGCCTCACAGACCTCCTCTTCCACCTGCCACTCCCTGGCCACAGTACAGACTGTGCCTGCTGACAGCCTGAATTTCATTCAGCAGATACAACAACATTCACTTCCTCGTTCCCGTAGTCGGCCCTCCACCTTGCCTCTTCCTGGCTCCAATCCAACCAGTCTTCAGGGTAGAGCTTCTAGGCATAATCATACGGCTGCACCCAAGTGCAGTCCCACACATGAACAGTGCTCCTATACTGAACTGCAGGACCTAGAAAAACCCTTAAAAGGGCTCAGATTATCAGGGGATGGCAACTACCTCTTAAAAGCTAAAAGTCCTTACATCATAGAGGATGTGATGGAGAAGAGCCTCAAACAAACTGGAGGAATTGATCTAAAGTGGAACTCTATCATGGCTTCTTTAGGGGTGATGCCAAACCAAGAAGGCTTGCATAGGCAGACGAAAATTAGGCAAAGTCCGCCTTTGGGGTATCCACCTTTTCACCTCCAATCCCATGCACAACAAGGTGATTGGGGTGGATTACAAAAGACATTGATGTCTCCAACCATTGACCTTTCAGCTGTTTCCCCACATAGTGCCTTACCTGACGAATCTCTGTTTAACATGACTACTGACCCCCATCTTAATCTCAAACAAGCAATTAAGCTGCAGTTTGAAGGGCCAACCAGTGCAGCACTTTACAAGCGAGAAACCCCTCTCTGAGGCAAACCTGGACGTTTAGGAGTTCAAGGAGGTGATGGTTGTTTGGGTAATCACCGCACTGGGTGTGAGGTGTCGAGAGTAGAGGAGGCTGGCAGATGAGAGTCATAACACGCTGACCTCCACCTCTTTTTAACCCATTGACCCCAAAGCACAAAAGGAGAAGGAAAGACATAGGGAGCCTGAAGGAACTTGAGTTCAAAGGCTCAAGCTGTGTACATTCCGAAGCCTTTCCTCCTTAACCCATCACAATGGAGAGCAGCTGGCACTCTCTCATACCCTGTTATACAATCACAGGAAACTATATTTACATTCGGAGAGACACTTATGGATATTTCCTTTGTTGGTTACATGCATTTGCAAAAGTTGACATACTGTATATCCCAGGAATTTTGGTTCACACAACATGCTCTGGTTCACAAAAGCATGAATGACTTCTCATAGACACATTGCGGTTCAGCAGTGGCAACTTTTTTTTCGAAAAACAAGAGCTAATATGAATGTGGCAGTAACTAGTGCACTACTACATTTAAAGTGTATACTTCTGTACAGTACTCAAACTCTGGTTTACACCCAGGCTTGCTTGCTGGGACAAAAAGGGCTTTTTTCAAAGCACCACAGTCACTTAATGGCTTTATATGCCAGATGTGTTTCCAACACTTGTGGAAGCATCAgcaatgtttgtgtgttttaaaaatgttctacATTTGACACTATATCTTTCAGGATATAGATGTTGTTACAACTTATTTACCTTTAGTTCTTAATTTCAGCAAGGTTATCAATGTTAAAGCTTTATTCCAGTTGAATTACAAAAAGAGATGGGAAAGTGGAAAGTTACCTAAAGTCTGACAGGATATTTAGGGAAGGTATGAGAGATCTCATGTACAGGATTAGATTTGAACGGAAGGTCATAAAACTGCAGGTTTTGACTTGAGGGAAAAGTTATGTGAATTTTACATTTTGCGATGGGTAAATTATAATGTTTGTTCTGTTTTGTATGTTAAGATTTATTGAAATGCACTAATTAAAAAATGCATATG

Function

GO:

id name namespace
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041008-117 Is expressed in several structures, including axial chorda mesoderm; chordo neural hinge; ectoderm; margin; and notochord.

Ensembl:

ensembl_id ENSDART00000020798

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073321 lncRNA upstream 221253 32649076 ~ 32651437 (+) False XLOC_037255
TCONS_00073325 lncRNA upstream 222586 32649507 ~ 32650104 (+) True XLOC_037255
TCONS_00074918 lncRNA upstream 335306 32536746 ~ 32537384 (+) True XLOC_037254
TCONS_00075155 lncRNA upstream 523665 32344883 ~ 32349025 (+) True XLOC_037252
TCONS_00074917 lncRNA upstream 634581 32223695 ~ 32238109 (+) True XLOC_037249
TCONS_00075156 lncRNA downstream 16329 32891897 ~ 32895100 (+) True XLOC_037257
TCONS_00073335 lncRNA downstream 270017 33145585 ~ 33147007 (+) False XLOC_037262
TCONS_00073336 lncRNA downstream 270504 33146072 ~ 33147664 (+) True XLOC_037262
TCONS_00075157 lncRNA downstream 851115 33726683 ~ 33742935 (+) False XLOC_037276
TCONS_00075158 lncRNA downstream 851126 33726694 ~ 33742935 (+) False XLOC_037276
TCONS_00073320 mRNA upstream 202164 32635546 ~ 32670526 (+) False XLOC_037255
TCONS_00073323 mRNA upstream 220271 32649088 ~ 32652419 (+) False XLOC_037255
TCONS_00073324 mRNA upstream 220274 32649118 ~ 32652416 (+) False XLOC_037255
TCONS_00073319 mRNA upstream 415356 32431666 ~ 32457334 (+) True XLOC_037253
TCONS_00073317 mRNA upstream 415486 32428679 ~ 32457204 (+) False XLOC_037253
TCONS_00073329 mRNA downstream 55054 32930622 ~ 32946439 (+) False XLOC_037258
TCONS_00073330 mRNA downstream 56057 32931625 ~ 32941616 (+) True XLOC_037258
TCONS_00073331 mRNA downstream 102734 32978302 ~ 32981660 (+) True XLOC_037259
TCONS_00073332 mRNA downstream 133716 33009284 ~ 33055440 (+) True XLOC_037260
TCONS_00073334 mRNA downstream 269954 33145522 ~ 33148873 (+) False XLOC_037262
TCONS_00073322 other upstream 220618 32649076 ~ 32652072 (+) False XLOC_037255
TCONS_00073307 other upstream 685438 32184055 ~ 32187252 (+) True XLOC_037247
TCONS_00073304 other upstream 768883 32100203 ~ 32103807 (+) True XLOC_037246
TCONS_00073294 other upstream 879257 31993311 ~ 31993433 (+) True XLOC_037244
TCONS_00073291 other upstream 1300011 31566399 ~ 31572679 (+) True XLOC_037241
TCONS_00073333 other downstream 199112 33074680 ~ 33082181 (+) True XLOC_037261
TCONS_00073341 other downstream 305114 33180682 ~ 33181352 (+) True XLOC_037264
TCONS_00073351 other downstream 368630 33244198 ~ 33245755 (+) True XLOC_037270
TCONS_00073362 other downstream 934878 33810446 ~ 33836470 (+) True XLOC_037278
TCONS_00073383 other downstream 1550160 34425728 ~ 34429112 (+) False XLOC_037290

Expression Profile

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