RNA id: TCONS_00075161


Basic Information

Item Value
RNA id TCONS_00075161
length 1988
lncRNA type antisense_over
GC content 0.39
exon number 3
gene id XLOC_037276
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 33726683 ~ 33764177 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gttCTTGTCATTTACTGTACATTTCCACAATGCAAACATCATAGTTATCATAGATGTAGGTGATTAACTTGACAACCTGCTGCTATTAGGTGTTATGAGCCATTGTCATACTTTGATGatgaaataaacacttaaaactgACATTTTCCACATATAGTCCGGCATGGTAGATTGTAAACCCCCACAGTAAAATCATGTACACAAGGTTTACAAAGTTTGACATTGGCAATACAAGAGTTTTTTCTTTGTTACTATATTATTAGGTATAATGAAGCAAAAATGTATGCTGGGACATGGGCAATTCCAGAGACTTTAAGGAGACAGATCACACAATAACGAGTTCTATTATTATTTACCTACCTGTAACCCAAAAATTGTATGACTTTATTTCTTCTgtggaacaaaaataaaaatatatatttttttctgtacaaTTTGAAAGGggacattcaatcattcattttccttcagcttattccctttatttatcaggggtcaccacagcggaatgaaccgccaactattccagcatatgttttacacagcggatgcacacgcgagcacggggagaacatgcaaactccacagagaaatgccaactagcccagccaggattcgaaccagcgaccttcttgctgtgaggtaacagtgcttaccactgagccaccgtgtcatccTGAAAGGGAACATGTTGTTTTGAATTCTATACACTTGTCTAAATTAAACAAGAGCGATGAAATGTCATACAAGGGTGCATTTCTTGAATGATGACATAACTCTCTTGACAAAAACTAACTAGCTAGTCATAACTTTAGTGATGTCGCAGGTGGTGGAGTGACAAGCTCTCGTAATTAAACAGTTTAAGGTCAGTAATGTTAGATTATTGCTGCAAAAACAACTACAAACATGGCATCTAAAGATTTGTTCTTCAACTACTCTGTTGTTGGTACCGGAGCAAGTGTGCACATGCACACTCTTGTTTTATGTTTGGAATAAAGCATGAAAAATGTTCTGCaatttacattacttattttccATGACGCATTTACCAAGTGCATGCTTTCTTAGGGTTCATATGTCACATTAAGAAGATATGCTTCTAAACACAGAAAGAAAGCTGAAGCCATAACCACACAAGCCTGTTGTGATGTTTATGAATTTTCTTGTTAACTATGCATTCTGGTAATGCCAAATTGTTATGTTTGTAAAAACTGAACTTGCTAACCTGGTTGGTTGATGGTTTTAAGCAACACGCCCCTGGTTTTGAATGACATGAGAtttgagtaaataataataacagaataaataaaaaattggggCTGGAGGGGAGAATTTGAAACTCTATCCTAGACATAAAACAAACTATAGTTCACCACTATCATTGTCTATGAAAACATTGAGGCTTCTCTGTCCTGGTTTGTATTTAGCCTCTCTGATATTGTAAAACGTAGTCCACCAAAGTGACTCCCACTTAGCTTCATCAAATTTCCTTCAAGATTTACGATGTTGTTGTCAGCATCCGCTATTTTACACACGCAGTGATCAAAACAATGGAATGCAATAAAAGTAAATTGACTGGCTGAGCGCATGCGCTGGTGTGACAAGCAGGCCGACATCTGGAAATCCGAGTGCATGCGCCGCTTTACACATGATGTGATTCTTCTTGAAGTCTCGATGGGTTGTTGGCAACATTTCGGCAGTGCTAATGAATCGTAAAATGGTTGCTCTGAATCATCAGCAATAAAGTGTACCTtcaaacttttttgtgtgtttcagcCCAGAGGGTCTTTCTCCATGACAAATTCATTCAGCTGCACTCCTCACAGCTGCACGCAAGGATGTAACGGTGACACCCTGCAGGATAGTCAGCAGAGGACATGTGACCAGAAGAAGTAGAATGCCCGGCTGGCTCAGAGCGACCGAGTTCCTCATAGTGTCTGCAGGAGCATCTGCAGTCTTTCAACACTCAGCTATTCTTTCAACTTCCG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073336 lncRNA upstream 585497 33146072 ~ 33147664 (+) True XLOC_037262
TCONS_00073335 lncRNA upstream 586154 33145585 ~ 33147007 (+) False XLOC_037262
TCONS_00075156 lncRNA upstream 838061 32891897 ~ 32895100 (+) True XLOC_037257
TCONS_00073321 lncRNA upstream 1081724 32649076 ~ 32651437 (+) False XLOC_037255
TCONS_00075162 lncRNA downstream 244737 33997142 ~ 34005582 (+) False XLOC_037279
TCONS_00075163 lncRNA downstream 244864 33997269 ~ 34008566 (+) False XLOC_037279
TCONS_00073363 lncRNA downstream 244896 33997301 ~ 34006838 (+) True XLOC_037279
TCONS_00073370 lncRNA downstream 469614 34222019 ~ 34226959 (+) True XLOC_037283
TCONS_00075164 lncRNA downstream 534349 34286754 ~ 34296124 (+) True XLOC_037285
TCONS_00073358 mRNA upstream 306126 33423170 ~ 33427035 (+) True XLOC_037275
TCONS_00073357 mRNA upstream 313840 33417969 ~ 33419321 (+) True XLOC_037274
TCONS_00073356 mRNA upstream 371962 33357011 ~ 33361199 (+) True XLOC_037273
TCONS_00073354 mRNA upstream 378423 33334501 ~ 33354738 (+) False XLOC_037272
TCONS_00073359 mRNA downstream 30656 33783061 ~ 33799756 (+) True XLOC_037277
TCONS_00073360 mRNA downstream 35984 33788389 ~ 33862124 (+) False XLOC_037278
TCONS_00073361 mRNA downstream 36221 33788626 ~ 33861493 (+) False XLOC_037278
TCONS_00073364 mRNA downstream 336751 34089156 ~ 34113209 (+) True XLOC_037280
TCONS_00073365 mRNA downstream 374600 34127005 ~ 34147996 (+) False XLOC_037281
TCONS_00073351 other upstream 487406 33244198 ~ 33245755 (+) True XLOC_037270
TCONS_00073341 other upstream 551809 33180682 ~ 33181352 (+) True XLOC_037264
TCONS_00073333 other upstream 650980 33074680 ~ 33082181 (+) True XLOC_037261
TCONS_00073322 other upstream 1081089 32649076 ~ 32652072 (+) False XLOC_037255
TCONS_00073307 other upstream 1545909 32184055 ~ 32187252 (+) True XLOC_037247
TCONS_00073362 other downstream 58041 33810446 ~ 33836470 (+) True XLOC_037278
TCONS_00073383 other downstream 673323 34425728 ~ 34429112 (+) False XLOC_037290
TCONS_00073385 other downstream 673370 34425775 ~ 34429120 (+) False XLOC_037290
TCONS_00073386 other downstream 673886 34426291 ~ 34429220 (+) True XLOC_037290
TCONS_00073390 other downstream 1038345 34790750 ~ 34790887 (+) True XLOC_037293

Expression Profile

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