Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00073362 |
| length | 847 |
| RNA type | processed_transcript |
| GC content | 0.48 |
| exon number | 9 |
| gene id | XLOC_037278 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007120.7 |
| NCBI id | CM002893.2 |
| chromosome length | 56459846 |
| location | 33788389 ~ 33862124 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0060026 | convergent extension | biological_process |
| GO:0060027 | convergent extension involved in gastrulation | biological_process |
| GO:0007420 | brain development | biological_process |
| GO:0008354 | germ cell migration | biological_process |
| GO:0048701 | embryonic cranial skeleton morphogenesis | biological_process |
| GO:0048703 | embryonic viscerocranium morphogenesis | biological_process |
| GO:0060324 | face development | biological_process |
| GO:0044666 | MLL3/4 complex | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0031490 | chromatin DNA binding | molecular_function |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0071558 | histone demethylase activity (H3-K27 specific) | molecular_function |
| GO:0003682 | chromatin binding | molecular_function |
| GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding | molecular_function |
| id | description |
|---|---|
| ko05202 | Transcriptional misregulation in cancer |
| ko03036 | Chromosome and associated proteins |
| id | description |
|---|---|
| ZDB-GENE-081105-56 | Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; chromatin DNA binding activity; and histone demethylase activity (H3-K27 specific). Acts upstream of or within several processes, including embryonic morphogenesis; face development; and germ cell migration. Predicted to be part of MLL3/4 complex. Is expressed in several structures, including blood island; ethmoid cartilage; otic vesicle; pharyngeal arch; and pronephric duct. Used to study Kabuki syndrome. Human ortholog(s) of this gene implicated in Kabuki syndrome; acute lymphoblastic leukemia; and esophagus squamous cell carcinoma. Orthologous to several human genes including KDM6A (lysine demethylase 6A). |
| ensembl_id | ENSDART00000131470 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00075160 | lncRNA | upstream | 46269 | 33726714 ~ 33764177 (+) | False | XLOC_037276 |
| TCONS_00075161 | lncRNA | upstream | 58041 | 33733161 ~ 33752405 (+) | True | XLOC_037276 |
| TCONS_00075157 | lncRNA | upstream | 67511 | 33726683 ~ 33742935 (+) | False | XLOC_037276 |
| TCONS_00075158 | lncRNA | upstream | 67511 | 33726694 ~ 33742935 (+) | False | XLOC_037276 |
| TCONS_00075159 | lncRNA | upstream | 67511 | 33726698 ~ 33742935 (+) | False | XLOC_037276 |
| TCONS_00075162 | lncRNA | downstream | 160672 | 33997142 ~ 34005582 (+) | False | XLOC_037279 |
| TCONS_00075163 | lncRNA | downstream | 160799 | 33997269 ~ 34008566 (+) | False | XLOC_037279 |
| TCONS_00073363 | lncRNA | downstream | 160831 | 33997301 ~ 34006838 (+) | True | XLOC_037279 |
| TCONS_00073370 | lncRNA | downstream | 385549 | 34222019 ~ 34226959 (+) | True | XLOC_037283 |
| TCONS_00075164 | lncRNA | downstream | 450284 | 34286754 ~ 34296124 (+) | True | XLOC_037285 |
| TCONS_00073359 | mRNA | upstream | 10690 | 33783061 ~ 33799756 (+) | True | XLOC_037277 |
| TCONS_00073358 | mRNA | upstream | 383411 | 33423170 ~ 33427035 (+) | True | XLOC_037275 |
| TCONS_00073357 | mRNA | upstream | 391125 | 33417969 ~ 33419321 (+) | True | XLOC_037274 |
| TCONS_00073356 | mRNA | upstream | 449247 | 33357011 ~ 33361199 (+) | True | XLOC_037273 |
| TCONS_00073354 | mRNA | upstream | 455708 | 33334501 ~ 33354738 (+) | False | XLOC_037272 |
| TCONS_00073364 | mRNA | downstream | 252686 | 34089156 ~ 34113209 (+) | True | XLOC_037280 |
| TCONS_00073365 | mRNA | downstream | 290535 | 34127005 ~ 34147996 (+) | False | XLOC_037281 |
| TCONS_00073366 | mRNA | downstream | 290536 | 34127006 ~ 34147996 (+) | True | XLOC_037281 |
| TCONS_00073367 | mRNA | downstream | 312244 | 34148714 ~ 34162374 (+) | False | XLOC_037282 |
| TCONS_00073368 | mRNA | downstream | 314897 | 34151367 ~ 34162047 (+) | True | XLOC_037282 |
| TCONS_00073351 | other | upstream | 564691 | 33244198 ~ 33245755 (+) | True | XLOC_037270 |
| TCONS_00073341 | other | upstream | 629094 | 33180682 ~ 33181352 (+) | True | XLOC_037264 |
| TCONS_00073333 | other | upstream | 728265 | 33074680 ~ 33082181 (+) | True | XLOC_037261 |
| TCONS_00073322 | other | upstream | 1158374 | 32649076 ~ 32652072 (+) | False | XLOC_037255 |
| TCONS_00073307 | other | upstream | 1623194 | 32184055 ~ 32187252 (+) | True | XLOC_037247 |
| TCONS_00073383 | other | downstream | 589258 | 34425728 ~ 34429112 (+) | False | XLOC_037290 |
| TCONS_00073385 | other | downstream | 589305 | 34425775 ~ 34429120 (+) | False | XLOC_037290 |
| TCONS_00073386 | other | downstream | 589821 | 34426291 ~ 34429220 (+) | True | XLOC_037290 |
| TCONS_00073390 | other | downstream | 954280 | 34790750 ~ 34790887 (+) | True | XLOC_037293 |
| TCONS_00073397 | other | downstream | 1132980 | 34969450 ~ 34969567 (+) | True | XLOC_037296 |
