RNA id: TCONS_00075162



Basic Information


Item Value
RNA id TCONS_00075162
length 1152
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id XLOC_037279
representative False

Chromosome Information


Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 33997142 ~ 34008566 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


CCGTGAGCCAGGAGGGAGCTGCCCCACTGCGATTCCTCCTGTGAAAACAGCAACCCCGTCACTCACCACACAAGTACCTCATTATCATCCACAGTCGGCTCCAAGTAAATCACTCCAATGCGCTGCAGCGGAGGTAAGCGGCCAGGCCGACATGTTCAATGCAAATCATACATACCGAAATTTCTGCCGCCGAGGACAGGACATAATACAAAACATAAGACAAACACGTCTGGTTTCCAAGCAACAGAGCCAGTCTGAACGCACCCTGAGGGAGGTTTTTCGTTTTTTTCGGGGTTCATCTCGAGGAGATTTCCTTGTGGTATTTGACTCCTCTGACCTCCCTCAAAAGGTCTGGATTTGCGTACCTTGGGAAAGCAGGAATTTTTTTGCGCCCGAGCTGGTGCAAGGATCTTATGAAGGGGATGCATCTGAAACATCTCTATTATCAGTCTGACAGCGGCTCGCTCTCCTCAAGACAGCAGTCCAGAAACTGCAACAAGAGGCCCGAGATCCTCTTGATTATTTTTAATGGTCTGTTTTACACCCTTTCAAAGGTACAAAAGCTGCTTGTTTTTTTGCAACCCACTAGCAACATACTTCTATACTCAAGACAAGTCTTATTATTAGAGAACAATAGAGCCTAAACAATAGCATCTTATTATCgattaacaaaatagttttgactCATCTCtcaattttttaaagtgtataaaaACTAGCTTACTAAAAAGACTGCAGTGGAACATTGTAGCATTTGACTGGAGATTTTACATTTCCATCAATAATGGGCaagatttattaaattttatcaattattttagtCTAAATGTGGGCATGCATTAACAATTTGTTCCCCCGTTTTAAAACATCTTGGCTATGGTAAACTAATTCATTCTCCTGTTTTAATTTCAAGAACTGTTTTACAATGTGGACACAATTTAGTAAAACGAGGGAAAGAAGAATTATTGGCTATAGTTAAACTGTCCTTCCTGTAGTTAAAAGCTACAGTTACCTGCAAACTGTGCAGATGCAAATATTAACTATCCTTACCTGCATAATGTTACTGTACATCACAAATAATTCTTTTTGGTATTGTAATATGTGGTTAGACAATGTCTGTACTTAAGTTATGCACACaatttttacacaaac

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00075160 lncRNA upstream 232965 33726714 ~ 33764177 (+) False XLOC_037276
TCONS_00075161 lncRNA upstream 244737 33733161 ~ 33752405 (+) True XLOC_037276
TCONS_00075157 lncRNA upstream 254207 33726683 ~ 33742935 (+) False XLOC_037276
TCONS_00075158 lncRNA upstream 254207 33726694 ~ 33742935 (+) False XLOC_037276
TCONS_00075159 lncRNA upstream 254207 33726698 ~ 33742935 (+) False XLOC_037276
TCONS_00073370 lncRNA downstream 216437 34222019 ~ 34226959 (+) True XLOC_037283
TCONS_00075164 lncRNA downstream 281172 34286754 ~ 34296124 (+) True XLOC_037285
TCONS_00074919 lncRNA downstream 365278 34370860 ~ 34378332 (+) False XLOC_037287
TCONS_00074920 lncRNA downstream 366025 34371607 ~ 34378100 (+) False XLOC_037287
TCONS_00074921 lncRNA downstream 366554 34372136 ~ 34373543 (+) False XLOC_037287
TCONS_00073360 mRNA upstream 135018 33788389 ~ 33862124 (+) False XLOC_037278
TCONS_00073361 mRNA upstream 135649 33788626 ~ 33861493 (+) False XLOC_037278
TCONS_00073359 mRNA upstream 197386 33783061 ~ 33799756 (+) True XLOC_037277
TCONS_00073358 mRNA upstream 570107 33423170 ~ 33427035 (+) True XLOC_037275
TCONS_00073357 mRNA upstream 577821 33417969 ~ 33419321 (+) True XLOC_037274
TCONS_00073364 mRNA downstream 83574 34089156 ~ 34113209 (+) True XLOC_037280
TCONS_00073365 mRNA downstream 121423 34127005 ~ 34147996 (+) False XLOC_037281
TCONS_00073366 mRNA downstream 121424 34127006 ~ 34147996 (+) True XLOC_037281
TCONS_00073367 mRNA downstream 143132 34148714 ~ 34162374 (+) False XLOC_037282
TCONS_00073368 mRNA downstream 145785 34151367 ~ 34162047 (+) True XLOC_037282
TCONS_00073362 other upstream 160672 33810446 ~ 33836470 (+) True XLOC_037278
TCONS_00073351 other upstream 751387 33244198 ~ 33245755 (+) True XLOC_037270
TCONS_00073341 other upstream 815790 33180682 ~ 33181352 (+) True XLOC_037264
TCONS_00073333 other upstream 914961 33074680 ~ 33082181 (+) True XLOC_037261
TCONS_00073322 other upstream 1345070 32649076 ~ 32652072 (+) False XLOC_037255
TCONS_00073383 other downstream 420146 34425728 ~ 34429112 (+) False XLOC_037290
TCONS_00073385 other downstream 420193 34425775 ~ 34429120 (+) False XLOC_037290
TCONS_00073386 other downstream 420709 34426291 ~ 34429220 (+) True XLOC_037290
TCONS_00073390 other downstream 785168 34790750 ~ 34790887 (+) True XLOC_037293
TCONS_00073397 other downstream 963868 34969450 ~ 34969567 (+) True XLOC_037296

Expression Profile


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