RNA id: TCONS_00073365


Basic Information

Item Value
RNA id TCONS_00073365
length 6397
RNA type mRNA
GC content 0.42
exon number 25
gene id XLOC_037281
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 34127005 ~ 34147996 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATACTTCTCTTCACTCCAGAACAGAACGTTTCTACCTggagtttcatttttaaatatgaaactCCGCTCCTGGCCAGGGGCCCTTCATGGTTTGGCCCTCCTGGCATTCCTGTGTCATTGTGCAACAGCTGTGGAGAGACATTACTATATTGCAGCTGTTAATATTAACTGGGACTACACATCTGGACAGCAAAGAACCGGACAATCATATAAAAAAGTAGTATACAGGGAATATAATGAGGGATTCAAACAGCCAAAAGCTCATCCCTTGTCCTCAGGGTTACTTGGGCCTACATTGCGTGGACAAGAGGGTGACACAATCATCGTCACGTTCAGGAACATGGCAGATCATCCTTGCAGCCTCCACCCCCATGGCATTGCTTACGGGAAGCAGTCAGAGGGGTCTTTATACTTTGACAACACGTCACTCCTTGAGAAAAATGATGATGTAATTCAACCTGGTGAAGAGCACACTTACCAGTGGGACGTGACGTCTGATGTGACCCCTACAGCTGCAGACCCACCATGCATCACCTACACATACTTGTCTCACTTTGACATTGTCCGAGACTACAATACAGGGTTAATAGGCCCAATGCTGATCTGCAAGAAAGGCACCCTAGACGACTCAGGAAATCAGATTCATTTCCATCAAGAGTCTGTGCTGCTGTTTGGAGTATTTGATGAGAACAAGAGCTGGTACAGCACTGGGGACTCTCCACAGCCTCTGAATGTCAAATACACAATAAACGGCTACACAAATGGCTCAGTACCAGATCTGGACATCTGTGCCCACTCTAAAGTCAGCTGGCACCTGCTGGGAATGAGCTCAGAGCCAGAGCTTTTCTCTGTACACTTCAATGGGCAAGTCCTTCTGCACGATGGGCACAAAACTTCAGCTGTTGGCATTATTAGTGGAACTGCCACCAGTGCCAGTATGACCGGTGTCCACCCTGGCCGCTGGCTCGTTTCCTCGCACATTAGCAAGCACTTGGAAGCTGGTTTGCACGGGTACCTAAATATCAGGAAGTGTGATGAGTATACGGCGCCAAAAAGACGGCTTACCATTGAACAGAAAAAAGAGAGTCAAGAGTGGACTTACTATATGGCAGCAGAAGAGGTCATCTGGGATTATGCGCCAAATATGCCAGAAAACATGGACGGGGATTTCCGGTCAAAATATTTAAAGCAGGGGCCTCAGCGGAtaggtaaaaaatataaaaaagctgTGTTTACTCAGTATAAAGATGGCATGTTTAAAGAGAGAGCGGAAGATAAGCAGAGGAAGAGAGAGCTTGGAATTCTTGGCCCAGTGATTAGAGCTCAAATCAGAGACATCATTAAGATTGTCTTTAAAAACAAAGCATCACGTCCCTATAGTATCTATCCCCATGGACTGACCATAGATAAAGCAGCAGAAGGAGCCAGTTACCCTCAGGGAGGGAACCAAACATACAGCGTTCAGCCAGGAGAGACGTACACATATACATGGAGTGTGACTGAGGAAGACGTACCAACGGACAGTGACCCCAGATGTCTAACCAGGATGTACCACAGTGCAGTGGACGCTCCTCGAGACATTGCTTCAGGTCTTGTTGGCCCTCTGCTCATCTGTAAGAGCCAGTCTCTTAACAAAAAGAATGTCCAGCTAAAAGCTGACAAGGAGCAGCATGCCATGTTTACCGTTTTTGATGAGAACAAGAGCTGGTACCAAGATGAGAACATTAACACATACTGCAGTGATCCCAAAAAAGTGAAGAAAGACGATCCCGAGTTTTACAAGTCAAATGTCATGCACACAATCAATGGTTATGTATATGAAAGCGGCCAAGAATTGGGATTTTGTCATGGTGAAATTGTGACTTGGCATGTGTCGAGTGTTGGGGAACAGGATTACATCCAGACTGCTACTTTCTATGGTCATACATTTGAGCTAAAAAACAGAGAAGAGGATATACTCAGTCTATTTCCTATGACTGGTGAAACTATCACGATGAACATGGTTAATATAGGTATTTGGCTTTTGGCATCATTGAACTCGCATGATTCCACTAAAGGGATGAGGGTGAAATTCAAAGACCTCGAATGCTTCAGAGATTATGTAATAGAATATGATTATGAGGACGGGAAATTCACTGCATGGAAACCACCGACTATTAATGAAATCAAAAAAGAGGAACCGGTCCGTGCAAGACCTGACGTGGTCGACGAGTACTCTGATTTATTTGCTGAAACCCTCAACTTAAGGACGTTCAACAATGTTAAAGATGAAGTTGAGATAATCGACTTGACATTTCTAGATCAAGATGATGGTTTGTTGCCCATTGTTGAAGAAAAAAGCCTGGGATCAAGCAACGAGAACTTACACAATGCTACTTTACAATCTTTCATTGAGACTCATGGTTTATTAATGGAGGAAGGTGATTTAGACAAGGGAGAATCTTCTAATAAAGTCTTGAATGACAGCACAGACAAGGCATTGCTAGAGACAACAACTACTTTTGATTCCAATAGAGTTGTCGCATTAAACAACGAAACGGACAGTATAATTTTAGATTTTCCAATTGTAGAAAGAAAGGTTCGTAGTGCACCATCAAAGCCAATGAACGAACCTGAAAGTGTCACTATGAACTTTAAAACAACAGAACATATCAATTCATCATTAGAGAGAATCAATGCTATATATTCCCCAATAACTGAAACAAACATCAACACAATGACTGAGACACACACTGATTTCAGTATCACTCCATTTGATGGTTCAACTGGAGAAATGAACTTCACACTAGAGGATGACACCGCACTTCTAAATTCATCTGAATCAGAGCCCCTGCAATCAAACCAAAACTCCGAAAACAGAATAGCTTTTCAAGAAGAGCTAAATGCAAAAGATGGCACAGATGTTGACAGTAATAATTCTGTGAAAAATCAGATCTTCAAATACAACGTGCCTAGTGGTGACACTCTGTCCAACAGCTCAAAGATACAAGTTGAGGAGGATTTTGTGCTTCTGGACAGTAGTTATTTTTCAGAAATGTCAACAACTATGGAATATGATGTTTCACAAAAGGACACTGTAAAAGGTGAATCAAAAGAGACTGCACAAAGTCAAGAACTCAGCAGCACAAAGAAAACTTACTCTGGTGAAATAATTTTGGAGAGTCTTCCTGACATAACAAGTGCTTTTAATCTGAATTCATCTTCAGTTTTGAGAAACAACAGTTTGGAGAGCAATGAGTCCTCAAATGAAACTTTGTTCATgtcttcaaatgctaccttctctgatTCAACAAATGCAACCTCGTCTGATTCCTCAACAGCAACCTTCGCTGATTTCTCAAACACAACCTTCTCAAACGCAACCTTCTCTGATTTCTCAAATAGGATTTCTCAAATGTCTGATTCCTCAAATGCAACCTTGTCTGATTCCTCAAATGCAACCTTGTCTGATTCCTCAAATGCAACATTGTCTGATTCCTCAAATGCAACATTGTCTGATTCCTCAAATGCAACATTGTCTAATTCCTCAAATGCAACCTTCTCTGATTCCTCAAACAAAACCTTCTCTGATTCCTCAAATGCAACCTTGTTTGGTGTTTCATATTCCTCAAACACAACCTTGTCTGACTTCAGTCTTGAATCTGAAATGACAGAGTATATACTGTCATCTGCTAATGATACAATAAAATCTCACAGTGAAGTTGTAAGCAACACTTCACAGCTTTCCTCTTCAGAAAGCACAGAGAATATATCGTTGTTGTATGGCTCTCTCAATGCTTCATCCATGAAGAACGACTCAGAAAGTGAAAGCGAAGAAGAAGTGGTTATCTacctaaataaaaatcacagtgaGGCAATCCTCACATCTCATCTCGACCAAAAAGAAGAGCACTGGGGTTATGAAAGCAAACACGAGCTGGTTCATAAGGAACTCCCAGATCACATGAACAAATATGTCAAAGATAAGTCTGCAGCAAACTCGAACAAGCCAAAGAtcgaaaaggaaaagaaaaaagtttaCCAAAGAGTAAAGCCAAAAAAGGGGTACGGGATGAAGACGAAGAAAAGTAAAGACTACAAACCGCAGCCGCGTTCGTCATTTTCTCCAAGAGGTTTTGGACCATCTGTGTTAACTCCAAGGGGAAGCAGACCTGTCTCTAGCGAGGATGAACTGACGGAGAAACCTATTGTCATAGGAGTGCCAAGACGGGATTTCAATGATTATGAGTTATATATTCCAAAACAAGACCAGGAAGCAGATTTTGATGGCTTGCTTGATcacccagaagaatatgaatatGTAGAGTATAAAGACCCTTACAGCAAAACAGCAGATGTTCAAGCTCTTGACGCAACATCCCAGCATCTCTTAAAAATGGCTGGAGACAAGAATACCAGGACCTATTTCATCTCGGTTGAAGAAGAAGAATGGGATTATGCTGGCTATGGGCAGAGGCGACTTGATAAAACAGCTCAAAATGAGAGGCCCACGGTTTTCAGAAAAGTGGTGTTCCGAAGGTACCTGGACAGCACCTTTAGCATCCGAGACATCCGAGGAGAAATGGACGAACACCTGGGAATTCTTGGTCCGCTCATTAAAGCGGAAGTTGATCAGACCGTTATGGTATTTTTCAGGAACCGTGCAAGTCGTCCATACTCTTTGCATGCAAATGGAGTAAAATACTTAAAACAAATGGAAGGCCTGAGTTATGATGATGAATCTCCATACTGGTACAAACAGGACGATGCTGTTCCACCCAATGGCACCTTTACCTACATGTGGACCATAAATCCCAAATCTGGACCTCAAAATAATGAATCTGACTGCCGAACTTGGACCTACTACTCTGCAGTGAATCCTGAGAGAGATATAAACTCAGGGTTGATTGGGCCACTTCTGGTGTGCAGGAAGGGTACACTTGATAAAAAGCCTGAAGACAGAAGAGAGTTTGTCCTGCTTTTCATGACATTTGATGAAAATAAAAGCTGGCTCTATGAAGAGAATCGGCAGAGGATTGAAAGGAAAAACAGAAGAGTGGTCATGGATCCAAATTTCCAAGATAATTTAAAGTTTGATGCTATCAATGGTATCATCTACAGTCTCAAAGGACTTCGAATGTACACAAATCAGCTGGCGAAGTGGCATCTGATCAACATGGGCTCTCCTAAAGACCTCCACAGTGTTCACTTCCATGGACAAACATtcataaataaagaattaaaggaCCACCGTCAGGGCGTTTACCCGCTTTTACCAGGTGGATTTGCCACGCTGGAAATGCTGCCTTCAAAGCCTGGTCTCTGGCAGCTGGAGTCTGAAGTCGGACTCTCACAGCAGAGGGGAATGCAAACGCTATTTCTTGTGTTGGATAATGTCTGTGATCACCCTCTTGGTCTCATCTCTGGGACTGTGCAAGATGAGCAAATAACAGCATCTGACACTAGAGGACAATGGTATCCTCATTTGGCCAGACTTCATAATACAGGGAAATACAATGCATGGAGTACATCGTCAGAGCCAGGACAGTACTTACAGGTGGACTTCCAGAGGCCGGTGGTGATTAGTAAAGTCGCCACACAAGGAGCCAAACAATTTTTGACACACAACTTTGTGTTGAACTACACCATTTCCTACAGCACTGACAAAAAGAAGTGGATCTACTACAAGGGAGACAGTGATGCTGTCAGAAAGACTTTTGAAGGAAATGCTGAAGCTTATGAGAcgaaggaaaatatatttttcccaCCTCTGATTGGTCGATATGTGAGACTGCATCCTTTACATTCTTACAACTTCCCGACTGTCCGTTTGGAGTATTATGGTTGTGAGCTTGATGGCTGCTCTGTGCCATTAGGAATGGAAAAAGGTCTTATTGATGACAGTAAAATCACTGCCAGTTCTGTGGCATCCAACTGGTACTCCGGACAGTGGCATCCTTGGTATGCTCGCCTAAATAAACAAGGAACCGCCAATGCATGGCAAGCAAAGAACAATGACATTCAGCCTTGGATCCAGGTGGAACTCAAAGAAGTAAAGAAGATAACTGGAATTGTAACACAGGGAGCCAAATCAATGGGCAATGAAATGTTTGTGAGATCTTATATTTTGGAATATAGTGAAGATGGCAGGCGATGGATGAAGTACacagatgatgatgattatgagcAAAAGCTATTTCAAGGCAACACAGATAACAATGGCCAAATAAAGAACTACATCTACCCGCCGATATTTTCCAGATTCATCAGAATAATACCAAAACAATGGCAGAAATCCGTCACCATGAGAATTGAGCTGCTGGGTTGTGATTTCGAATAAACACTTTGCTGTCTATGGTGGATTTTGTTTTTAATCTATATTTTCTTTGCTAGTAAATAAATGCTTTCTTTTAAacaa

Function

GO:

id name namespace
GO:0009617 response to bacterium biological_process
GO:0007599 hemostasis biological_process
GO:0005507 copper ion binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
ko04610 Complement and coagulation cascades

ZFIN:

id description
ZDB-GENE-030131-5531 Predicted to enable copper ion binding activity. Acts upstream of or within hemostasis and response to bacterium. Is expressed in liver. Human ortholog(s) of this gene implicated in several diseases, including artery disease (multiple); end stage renal disease; factor V deficiency; liver disease (multiple); and non-arteritic anterior ischemic optic neuropathy. Orthologous to human F5 (coagulation factor V).

Ensembl:

ensembl_id ENSDART00000167384

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075163 lncRNA upstream 118439 33997269 ~ 34008566 (+) False XLOC_037279
TCONS_00073363 lncRNA upstream 120167 33997301 ~ 34006838 (+) True XLOC_037279
TCONS_00075162 lncRNA upstream 121423 33997142 ~ 34005582 (+) False XLOC_037279
TCONS_00075160 lncRNA upstream 362828 33726714 ~ 33764177 (+) False XLOC_037276
TCONS_00075161 lncRNA upstream 374600 33733161 ~ 33752405 (+) True XLOC_037276
TCONS_00073370 lncRNA downstream 74023 34222019 ~ 34226959 (+) True XLOC_037283
TCONS_00075164 lncRNA downstream 138758 34286754 ~ 34296124 (+) True XLOC_037285
TCONS_00074919 lncRNA downstream 222864 34370860 ~ 34378332 (+) False XLOC_037287
TCONS_00074920 lncRNA downstream 223611 34371607 ~ 34378100 (+) False XLOC_037287
TCONS_00074921 lncRNA downstream 224140 34372136 ~ 34373543 (+) False XLOC_037287
TCONS_00073364 mRNA upstream 13796 34089156 ~ 34113209 (+) True XLOC_037280
TCONS_00073360 mRNA upstream 264881 33788389 ~ 33862124 (+) False XLOC_037278
TCONS_00073361 mRNA upstream 265512 33788626 ~ 33861493 (+) False XLOC_037278
TCONS_00073359 mRNA upstream 327249 33783061 ~ 33799756 (+) True XLOC_037277
TCONS_00073358 mRNA upstream 699970 33423170 ~ 33427035 (+) True XLOC_037275
TCONS_00073367 mRNA downstream 718 34148714 ~ 34162374 (+) False XLOC_037282
TCONS_00073368 mRNA downstream 3371 34151367 ~ 34162047 (+) True XLOC_037282
TCONS_00073369 mRNA downstream 74001 34221997 ~ 34227472 (+) False XLOC_037283
TCONS_00073371 mRNA downstream 82071 34230067 ~ 34238980 (+) False XLOC_037284
TCONS_00073372 mRNA downstream 84507 34232503 ~ 34243967 (+) True XLOC_037284
TCONS_00073362 other upstream 290535 33810446 ~ 33836470 (+) True XLOC_037278
TCONS_00073351 other upstream 881250 33244198 ~ 33245755 (+) True XLOC_037270
TCONS_00073341 other upstream 945653 33180682 ~ 33181352 (+) True XLOC_037264
TCONS_00073333 other upstream 1044824 33074680 ~ 33082181 (+) True XLOC_037261
TCONS_00073322 other upstream 1474933 32649076 ~ 32652072 (+) False XLOC_037255
TCONS_00073383 other downstream 277732 34425728 ~ 34429112 (+) False XLOC_037290
TCONS_00073385 other downstream 277779 34425775 ~ 34429120 (+) False XLOC_037290
TCONS_00073386 other downstream 278295 34426291 ~ 34429220 (+) True XLOC_037290
TCONS_00073390 other downstream 642754 34790750 ~ 34790887 (+) True XLOC_037293
TCONS_00073397 other downstream 821454 34969450 ~ 34969567 (+) True XLOC_037296

Expression Profile

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