RNA id: TCONS_00073367


Basic Information

Item Value
RNA id TCONS_00073367
length 2354
RNA type mRNA
GC content 0.46
exon number 6
gene id XLOC_037282
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 34148714 ~ 34162374 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACGTCACCAGCGCCTCTTTATTCACCGCCGACCGCAGCAGCCGCAACAAATGAACGTCTCGTAATCAGTTAATACTTTGTAACCGCTTTAAAACTTGGAAAATGCGTCTCTGGGAAGTGTTATCGTTCCGCGAGAGCGTGAGAAAACCGAGCATCTTACAGGAGGAGAGAAAGTTTGGATTAAAGTTAGTAGCCGCTGTCTAACAAAGCCAGTCTGGAGAAAGTTACTCCTGCTGCTGCACCATAGCGGGATCTCGCCTCGACAGGCCCCGAGAACTGTTTGTCAACATGCCTCTCAAGTCATTGGCAACCAGAAGCCTCCCATAATGAACGGCTCTAAGAATGGGACGGCGGTGGCCAACTCCACTAATGGCCTGGATGACAACGGGCTCATGGTCCTGGAGTCTGTCTCTATCATCATCATAGCCATACTGGCATGTCTGGGGAATCTGGTCATTGTGGTGACTCTTTATAAAAAGCCCTACTTGCTAACACCCAGCAACAAGTTTGTCTTCAGCCTGACTTCATCCAATTTGCTATTATCAGTTCTAATGCTGCCGTTTGTTGTGGCCAGTTCGGTGCGTCGGGATTGGATGTTTGGGGTGGTGTGGTGCAATTTCACAGCGCTGCTCCATCTACTTGTCAGCTCATCTAGCATGCTTACACTTGGAGCCATTGCCATTGACAGGTACTATGCAGTATTATACCCCATGATCTACCCCATGAAAATCACCGGAAATCGAGCTGTGCTTGCAATCGTTTACATCTGGCTCCATTCCCTAGTTGGCTGCCTGCCGCCTCTTTTCGGATGGTCATCGTTTGAGTTTGACCGCTTCAAATGGACCTGCACGGTGTCCTGGCACAAGGAGATCAGCTATACTGCCTTTTGGGTTACATGGTGTTGCCTTTTGCCGCTGGTGGCCATGTTGGTCTGCTACGGAGTAATTTTCCGCGTAGCTCGCATCAAAGCTCGTAAGGTTTATTGCGGCAGTGTTGTGGTGTCTCAAGAAGAGTCCAGCTCTCAAAATAATGGCCGCAAAAACTCCAACACCTCAACATCTTCTAGTGGCAGCCGCAAAAGCCTGATTTACTCTGGGAGCCAATGCAAGGCCTTCATCACCATTTTAGTGGTTCTGGGGACATTTCTGACCACTTGGGGTCCTTATGTGGTTGTTATCAGCACCGAAGCACTATTAGGGAAAAATAGTGTTTCTCCACAAGTTGAGACGCTGGTTTCTTGGCTGTCTTTTACCAGTGCTGTGTGTCATCCACTTATTTATGGGCTGTGGAACAAGACTGTACGCAAGGAGCTGTTGGGGATGTGTTTTGACGATCGGTACTACAGAGAGTCATTTGTTATACGGCACCGGACCTCTCGTCTGTTTAGCATCTCAAACCGGATAACAGATTTAGGGATGTCTCCTCATCTGACGGCCATGTTGGTTGGTGGAGGTCAGCTTTTGGGCCGTGGAAGCAGCACTGGAGACACTGGCTTCAGCTACACACAAGACTCAGCAACAGACGTCATGCTGTTGGAGAGCTACACCTCAGAGGCGTCCCACTCAGCCCACTGCACCGCCAATAAGAGGAGGAGCTCGGTCACATTCGAGGACCAAGTGGATCACATACCACAAGGTGACCCTTCAGTAGTCCAAGTGACGGCAGACATCCACAAATCTTTGGACAGTTTTGCATCCTCTCTGGCCAAGGCTATAGAGAACGACGCCAAGCTTCAGCTCTTAGGAGAATGGACACAAATTCCCACAAGTCTGTTCACAGTTCGAAACACACAGCGAGTGCCTCGGTATCTGGACGGACAGAGACTCAGGATGGAAAGCATCGATGAAGGAATAGtcaaagatgatgatgatgatgaagaagaaatGGAGCGCGAGGAAAAAATGTAGTTCTTTCGACTGTGAACTTCTTCAAGGATCAGATTGTTATTTAATCTGCAGCTTTTGAAGGTACAGAATGTTATACAAACACATTGGCACATGTTTACAGATAAGACTGGCATACTATGTAATAAACTTGACTGTTTTAGCAAGCAACTGCTGCTGCTACATGCTTTCGTGAGACCAAAGCGCGACCATGATTGCTGTACCGCCAATGTTTCAGGTACTAGAAGCCCTACTGCATCTCACCAGAATATGTTTTTGTAACATAAAAGATACTGTAAAGTTATGTACAGCCGTCATATATGGTCAGGTGTTTGCGTTTAAatgtttacttcttttttttaatacaagGAAATTGTAATCACTCTTTTATATGTACTGTTTGTAATTATGTTTGCTCCTCTCCAATTTTTCATGTTCAGGtttgataatataataaaataactgaaGTGCT

Function

GO: NA

KEGG:

id description
ko04340 Hedgehog signaling pathway
ko04030 G protein-coupled receptors

Ensembl:

ensembl_id ENSDART00000078051

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075163 lncRNA upstream 140148 33997269 ~ 34008566 (+) False XLOC_037279
TCONS_00073363 lncRNA upstream 141876 33997301 ~ 34006838 (+) True XLOC_037279
TCONS_00075162 lncRNA upstream 143132 33997142 ~ 34005582 (+) False XLOC_037279
TCONS_00075160 lncRNA upstream 384537 33726714 ~ 33764177 (+) False XLOC_037276
TCONS_00075161 lncRNA upstream 396309 33733161 ~ 33752405 (+) True XLOC_037276
TCONS_00073370 lncRNA downstream 59645 34222019 ~ 34226959 (+) True XLOC_037283
TCONS_00075164 lncRNA downstream 124380 34286754 ~ 34296124 (+) True XLOC_037285
TCONS_00074919 lncRNA downstream 208486 34370860 ~ 34378332 (+) False XLOC_037287
TCONS_00074920 lncRNA downstream 209233 34371607 ~ 34378100 (+) False XLOC_037287
TCONS_00074921 lncRNA downstream 209762 34372136 ~ 34373543 (+) False XLOC_037287
TCONS_00073365 mRNA upstream 718 34127005 ~ 34147996 (+) False XLOC_037281
TCONS_00073366 mRNA upstream 718 34127006 ~ 34147996 (+) True XLOC_037281
TCONS_00073364 mRNA upstream 35505 34089156 ~ 34113209 (+) True XLOC_037280
TCONS_00073360 mRNA upstream 286590 33788389 ~ 33862124 (+) False XLOC_037278
TCONS_00073361 mRNA upstream 287221 33788626 ~ 33861493 (+) False XLOC_037278
TCONS_00073369 mRNA downstream 59623 34221997 ~ 34227472 (+) False XLOC_037283
TCONS_00073371 mRNA downstream 67693 34230067 ~ 34238980 (+) False XLOC_037284
TCONS_00073372 mRNA downstream 70129 34232503 ~ 34243967 (+) True XLOC_037284
TCONS_00073373 mRNA downstream 156959 34319333 ~ 34352612 (+) False XLOC_037286
TCONS_00073374 mRNA downstream 156959 34319333 ~ 34352617 (+) False XLOC_037286
TCONS_00073362 other upstream 312244 33810446 ~ 33836470 (+) True XLOC_037278
TCONS_00073351 other upstream 902959 33244198 ~ 33245755 (+) True XLOC_037270
TCONS_00073341 other upstream 967362 33180682 ~ 33181352 (+) True XLOC_037264
TCONS_00073333 other upstream 1066533 33074680 ~ 33082181 (+) True XLOC_037261
TCONS_00073322 other upstream 1496642 32649076 ~ 32652072 (+) False XLOC_037255
TCONS_00073383 other downstream 263354 34425728 ~ 34429112 (+) False XLOC_037290
TCONS_00073385 other downstream 263401 34425775 ~ 34429120 (+) False XLOC_037290
TCONS_00073386 other downstream 263917 34426291 ~ 34429220 (+) True XLOC_037290
TCONS_00073390 other downstream 628376 34790750 ~ 34790887 (+) True XLOC_037293
TCONS_00073397 other downstream 807076 34969450 ~ 34969567 (+) True XLOC_037296

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000009_03164135_03169470.mRNA True 4086 mRNA 0.42 5 CI01000009 3162318 ~ 3170140 (+)