RNA id: TCONS_00073370


Basic Information

Item Value
RNA id TCONS_00073370
length 826
lncRNA type retained_intron
GC content 0.46
exon number 4
gene id XLOC_037283
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 34221997 ~ 34227472 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCGTCCCCGCTGACACTTCCCAAGACAACACAACAGTAAACTGCATTAGCAAGGTCGAAAGTAGGGCAATAACGTTAACTTTGCACTTTATGCTCGTccaaaggttttgttttattgATCACCGGCTCCTGCCTTTTGGAAACATCACGAGTCAATAGTAGAAGACTGCTTTGCACATCCCGTGCTGTGTTTTTAGTGAGGGCAGCGGTAGCATTTAGCTCCTTTAACGTTAGCAGTCATCATGGCTATGGTGGGGCTGAGAGCTTCTTACCACAGAATCCTCGACAGGATGGAGCACATGCTGCCGGCTAAACTGAGACCCTTTTATAACCACCCTGCAGGTCCAAAGACTGTCTTCTTCTGGGCACCAATGTTCAAATGGggcctggtcttagctggattAGCAGACATGGCACGTCCAGCTGAGAAACTCAGTACTTCCCAATCTGCTGTGCTGACAGCTACAGGTTGATCCCTCTATTACACAGTTACCAACTTATTTTTACAACCAGCAAAAACAGCATTTAAAGATTCAAATCTCCATCACTCTCTGTTTTTTATAGGTCTCATCTGGTCCAGGTATTCCCTGGTTATTATACCCAAGAACTGGAACCTGTTTGCTGTGAACTTCTTTGTTGGAAGTGCAGGAGGATCACAGCTGTACAGGATATGGATGCATAACCGAGAACAGAAGGCAAAGGAGAAAGAAGCACAGGCTTGATAGCAGTGCAGTTTAAAATGCATCCAGAGGACCGAAAGGGACTCTCCTCTACTGCTAACCCAGAAAATTCCCTTCCATCATCAGTCATCCAGTAGAGCCTCCACA

Function

GO: NA

KEGG:

id description
ko05415 Diabetic cardiomyopathy
ko03029 Mitochondrial biogenesis
ko02000 Transporters

Ensembl:

ensembl_id ENSDART00000143089

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075163 lncRNA upstream 213453 33997269 ~ 34008566 (+) False XLOC_037279
TCONS_00073363 lncRNA upstream 215181 33997301 ~ 34006838 (+) True XLOC_037279
TCONS_00075162 lncRNA upstream 216437 33997142 ~ 34005582 (+) False XLOC_037279
TCONS_00075160 lncRNA upstream 457842 33726714 ~ 33764177 (+) False XLOC_037276
TCONS_00075161 lncRNA upstream 469614 33733161 ~ 33752405 (+) True XLOC_037276
TCONS_00075164 lncRNA downstream 59795 34286754 ~ 34296124 (+) True XLOC_037285
TCONS_00074919 lncRNA downstream 143901 34370860 ~ 34378332 (+) False XLOC_037287
TCONS_00074920 lncRNA downstream 144648 34371607 ~ 34378100 (+) False XLOC_037287
TCONS_00074921 lncRNA downstream 145177 34372136 ~ 34373543 (+) False XLOC_037287
TCONS_00074922 lncRNA downstream 145889 34372848 ~ 34374055 (+) False XLOC_037287
TCONS_00073367 mRNA upstream 59645 34148714 ~ 34162374 (+) False XLOC_037282
TCONS_00073368 mRNA upstream 59972 34151367 ~ 34162047 (+) True XLOC_037282
TCONS_00073365 mRNA upstream 74023 34127005 ~ 34147996 (+) False XLOC_037281
TCONS_00073366 mRNA upstream 74023 34127006 ~ 34147996 (+) True XLOC_037281
TCONS_00073364 mRNA upstream 108810 34089156 ~ 34113209 (+) True XLOC_037280
TCONS_00073371 mRNA downstream 3108 34230067 ~ 34238980 (+) False XLOC_037284
TCONS_00073372 mRNA downstream 5544 34232503 ~ 34243967 (+) True XLOC_037284
TCONS_00073373 mRNA downstream 92374 34319333 ~ 34352612 (+) False XLOC_037286
TCONS_00073374 mRNA downstream 92374 34319333 ~ 34352617 (+) False XLOC_037286
TCONS_00073375 mRNA downstream 104409 34331368 ~ 34342263 (+) False XLOC_037286
TCONS_00073362 other upstream 385549 33810446 ~ 33836470 (+) True XLOC_037278
TCONS_00073351 other upstream 976264 33244198 ~ 33245755 (+) True XLOC_037270
TCONS_00073341 other upstream 1040667 33180682 ~ 33181352 (+) True XLOC_037264
TCONS_00073333 other upstream 1139838 33074680 ~ 33082181 (+) True XLOC_037261
TCONS_00073322 other upstream 1569947 32649076 ~ 32652072 (+) False XLOC_037255
TCONS_00073383 other downstream 198769 34425728 ~ 34429112 (+) False XLOC_037290
TCONS_00073385 other downstream 198816 34425775 ~ 34429120 (+) False XLOC_037290
TCONS_00073386 other downstream 199332 34426291 ~ 34429220 (+) True XLOC_037290
TCONS_00073390 other downstream 563791 34790750 ~ 34790887 (+) True XLOC_037293
TCONS_00073397 other downstream 742491 34969450 ~ 34969567 (+) True XLOC_037296

Expression Profile

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