RNA id: TCONS_00073372


Basic Information

Item Value
RNA id TCONS_00073372
length 2518
RNA type mRNA
GC content 0.48
exon number 6
gene id XLOC_037284
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 34230067 ~ 34243967 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTGCTTTCTTCTGTTTACACATGGGGCGGAAATGAGGATGCGTGCTTGAGTGTTAGCAAAGCGTCTGGACGTATATAGGCTGCTCGTTGTTCTTTAATCTTATCTACTGATGTCCGCTTAAGGCACTGGATTATTTAGTTAATATCTGGTGGACTGTTGTTCTTGATGTTGGCGTCATGAGGGATAAAACAACGCTGTCAGCAGCAGCGGCGCTGCAGTACTGCAACATCGTTGCAGATGCATGCAATAATGGCCAGCCATGAGCAACTGTAGTGGTGGACAGAAGGATGACCGAGAGAGGAAATGATGGAGAAATACTTTCCCAAATACGTCCCTTTCTTCAGTCTGCTGGCGCTGTCAGGACTGCTGTATCTGCTGTGGAGCATCACCTCGCTGGAGAGCTGGAACTGTCAGACAGTATCAACCTTCTATCAGCTTCAAAACAGCATCCAGTCAGTCTTGAAAACCTCTGAGCTTCTTCTGCCCACGGAGTTCAACTACTCGTTCTGTGCCCACCTTGGCCAGGAGCCCACTTTAGAGGAGGCCAGAGAGGAGAGTTACCTTCTCAAATCCATTGCCTGGCCAGAGCCGTCAACTCTGGGACTGCCTCTGCGTCAAAGTAGCGACCCAGCACAAAGCTATTACACCATCCAAGACACTGGAGACCTGCGGGTCGGAGGGCAGCTGGCGGTCAAAGTGCAGATTCACAACTTTTTGGGCCAACCCAAAAAACACGGAGGAGACTTTCTAGTAGCACGACTTCACACACCAGAGTTGGTGGCAGGAGTCGCGGGGCAGGTCCGTGACCACAACAATGGAAACTACACAATATTTTTCCCGCTGCTTTGGGCAGGTGTTGCCCAGGTGGAGCTGACAATGATTCACTCCAGCGAAGCCGTGATGGTCCTTAAGCGACTGAGAGAGGAGCAGTCGGACAGAGTGTTTTTCAAGAGCCTCTTCCGCTCGGGTTACATCTCTGAATCCACTCTGTGTAATCTGTGTTTGCCGCTCAAACCGCAGCCGCTTTGCAACTACACAGACCCCCAGACTGGAGAACCCTGGTACTGTTATAAGCCTAAGATGTTGGACTGTGATACACGGATAAACCACTCCAAAGGGGGGTATAAGAAAAACCTTCTCACTGTTTATGAGTCACAGTTCTTCCAAAGTGGAGTAAATATCAAAGTTCCAATACATTCTGCAGGGGTGGACAATGTGACTGTTCTGCCTGCTTCTAAAGTACGAACCAAAAAGATGCGTCTTGAATTCACTCCGTCCGGTTACTACTACCAGGGATCATGGAGGCCGTTGAGTGGTGTGGTCCCGCGTCAGTTCAATACCTCTTCACTCATAAACCAGTGTCTTAGAGGCAAAATGCTCTACATGTATGGAGACTCCACTGTGAGGCAATGGTACGAGTATCTTATCACAAACGTCCCAGAGTTCAAAGAATTCAACTTTCACAGCGCAAAGAATGTGGGGCCTTACATGGGAGTGAACATGAACTACAACGCACTGTTGAAGTACCGCTGCCACGGACCGCCTATCCGCTTCACCTCAGTCTCCTCAGCTGAGATGCGCTACATCTCAAACGAGCTGGACGGCTTGAGCGGGGGTTCAGACACAGTGGTTGTGATTAGCATCTGGTCACATTTCAGCACTTACCCAGTGGCCGTGTACATACGACGCTTGCGCCACATCCGCAAGGCCGTAATCCGACTGCTAAACCGAGAACCCACCACTCTCGTGTTCATACGCACCGGCAACCTCCAGAAGTTGGACGCAGAGTCTAGCTTGTTCAACAGCGACTGGTTTTCCCAACAGCTTGACACAGTGCTGAGAGCCATGTTTAAAGGTCTAAACGTTCAGCTGGTGGACGCCTGGGAGATGACGCTCGCCCACCACCACCCGCATCAACTGCACCCTCAACTCGACATTGTATCCAACATGGTAAACTTCATCCTTTCCCACATCTGCCCagtgagaaaaaagaaaaaacgcgGTTAGCTTATGCATGCGCTGTTTGTGGGCATTCTTGAGGAACTAGTGAGTTTGCTCTTACCTCTGGCTTTGGGATCAGCTCTTTCGCTATGTATTCAGCCATTGTTTGCTTTGTGTTTAAACTTACAAATGACCGTGATGATTTTGCTTGCAATATTAAAATGCAAAAGCATCAGAAGTTAATGTAGCCTTTGGCAATTTGCACCGATACCGATATCGTTATTGGGCTCGATGCTGAGCTCACGTACTCCGATACCAAAGACAGATACCTACTTTTGATTGTTACACAACATTGAACGTTGTTATATAGTGGTATGCTACAATGTTTGTTTGGGGGAATAAGATTTGGAGCTTTTTGACAACTTTGTGACCGGTCGATGAggatttttattgaattttattatgtccttggtttgctaaatgtttgtgaaatgttttgtgccactttgtgacaaacagaaaaagcagtttgagttattgttgtttaaaattaCAGAGAAGCTGTGCTAAAGTTAA

Function

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061013-214 Predicted to be located in extracellular region. Orthologous to human NXPE3 (neurexophilin and PC-esterase domain family member 3).

Ensembl:

ensembl_id ENSDART00000132836

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073370 lncRNA upstream 5544 34222019 ~ 34226959 (+) True XLOC_037283
TCONS_00075163 lncRNA upstream 223937 33997269 ~ 34008566 (+) False XLOC_037279
TCONS_00073363 lncRNA upstream 225665 33997301 ~ 34006838 (+) True XLOC_037279
TCONS_00075162 lncRNA upstream 226921 33997142 ~ 34005582 (+) False XLOC_037279
TCONS_00075161 lncRNA upstream 480098 33733161 ~ 33752405 (+) True XLOC_037276
TCONS_00075164 lncRNA downstream 42787 34286754 ~ 34296124 (+) True XLOC_037285
TCONS_00074919 lncRNA downstream 126893 34370860 ~ 34378332 (+) False XLOC_037287
TCONS_00074920 lncRNA downstream 127640 34371607 ~ 34378100 (+) False XLOC_037287
TCONS_00074921 lncRNA downstream 128169 34372136 ~ 34373543 (+) False XLOC_037287
TCONS_00074922 lncRNA downstream 128881 34372848 ~ 34374055 (+) False XLOC_037287
TCONS_00073369 mRNA upstream 5031 34221997 ~ 34227472 (+) False XLOC_037283
TCONS_00073367 mRNA upstream 70129 34148714 ~ 34162374 (+) False XLOC_037282
TCONS_00073368 mRNA upstream 70456 34151367 ~ 34162047 (+) True XLOC_037282
TCONS_00073365 mRNA upstream 84507 34127005 ~ 34147996 (+) False XLOC_037281
TCONS_00073373 mRNA downstream 75366 34319333 ~ 34352612 (+) False XLOC_037286
TCONS_00073374 mRNA downstream 75366 34319333 ~ 34352617 (+) False XLOC_037286
TCONS_00073375 mRNA downstream 87401 34331368 ~ 34342263 (+) False XLOC_037286
TCONS_00073376 mRNA downstream 90189 34334156 ~ 34349651 (+) False XLOC_037286
TCONS_00073377 mRNA downstream 106058 34350025 ~ 34378674 (+) True XLOC_037286
TCONS_00073362 other upstream 396033 33810446 ~ 33836470 (+) True XLOC_037278
TCONS_00073351 other upstream 986748 33244198 ~ 33245755 (+) True XLOC_037270
TCONS_00073341 other upstream 1051151 33180682 ~ 33181352 (+) True XLOC_037264
TCONS_00073333 other upstream 1150322 33074680 ~ 33082181 (+) True XLOC_037261
TCONS_00073322 other upstream 1580431 32649076 ~ 32652072 (+) False XLOC_037255
TCONS_00073383 other downstream 181761 34425728 ~ 34429112 (+) False XLOC_037290
TCONS_00073385 other downstream 181808 34425775 ~ 34429120 (+) False XLOC_037290
TCONS_00073386 other downstream 182324 34426291 ~ 34429220 (+) True XLOC_037290
TCONS_00073390 other downstream 546783 34790750 ~ 34790887 (+) True XLOC_037293
TCONS_00073397 other downstream 725483 34969450 ~ 34969567 (+) True XLOC_037296

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000009_03211734_03220047.mRNA False 2997 mRNA 0.45 6 CI01000009 3211734 ~ 3221307 (+)