RNA id: TCONS_00073376


Basic Information

Item Value
RNA id TCONS_00073376
length 1881
RNA type mRNA
GC content 0.59
exon number 11
gene id XLOC_037286
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 34319333 ~ 34378674 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTGACTTTGACTCCAGCTCAGCAGCAGTTGTTGCTGCAGCAGGCTCAGGCTCAGCTCTTAGCAGCAGCGGTTCAGCATTCAGCCGGTCAGCAGAGCAGCACTACAGGAGCCAGCATCTCTGCCTCCGCTGCCACCCCCATCACCCAGATCCCCCTCTCCCAGCCCATCCAGATCACACCTcAGTTActgcaacagcagcagcagcagcagaaccTCAACCTGCAGCAGTTTGTGCTGGTCCAGCCGGGCCATCCCATCGCAACACAGCTGCAGCCCGCGCAGTTCATCATCTCACAGACGCCACAGGGCCAGCAGAGTCTCCTGCAAGCCCAGAACCTTCTAACTCAACTACCTCAAAGCCAAGCCAACCTCCTGCAGACCCAGCCAAGCATCACACTTGCCACACAGcctgcgacccccacaCGCACGATAGCAGCGACCCCCATCCAGTCCCTTGCTCACACCCAGACGACACCAAAGCACATGGACACACCAAGCCTGGAGGAGCCCAGCGACCTGGAGGAGCTCGAGCAGTTCGCCAAGACCTTCAAACAGAGACGCATCAAACTGGGCTTCACGCAGGGGGATGTTGGCCTTGCCATGGGAAAACTATATGGAAATGACTTCAGCCAAACCACCATTTCTCGCTTTGAGGCCTTGAACCTGAGCTTTAAAAACATGTGCAAACTGAAGCCTCTGCTTGAAAAATGGCTCAACGACGCAGAGAACCAGACGTCTGACCAGGCCCTGTCCAGTCCCAGCTCTCTTGGCTCACCGGGGCTGGGCATGGAGGGCCTGAACCGCCGCCGCAAGAAGAGGACCAGCATCGAGACCAACATCAGAGTGGCCTTAGAAAAGAGCTTTCTGGAGAACCAAAAACCTACCTCTGAGGAGATCACCATGATTGCAGACCAGCTCAATATGGAGAAGGAGGTGATCCGAGTGTGGTTCTGTAACCGCAGACAGAAGGAGAAGAGGATCAACCCGCCCAACAACGGCAGCGCTGCCAGCACCCCTATCAAAGCAATCTTCTCTCCCACCACAACTCTGGTGCCGAGTACAGCCAGTCTTATTACCAGTAACACACCGACTACAATGACTGTAAACCCAGTTTTGCCTCTCACCAGCACTAGTGTCTCCGGCATCAGTTTCACTGGCACAACTCTGGGCTCGGCCATCAATAACACTGCATCGGTCATCTCCACTGCACCCGCGGCCACCACCGCCTCGTCCTCTCCCTCCCTCAGCCCTTCTCCCACTGCAGTGCAGACGTCCTCCTCAGAGCAGGCTTCAGCTCAGGAGACGCTCACGGCCGTCAGTCAGGCACCTTCCTCCCTGGCGTCTACCCTGGGCACTGGGCAGGTGATGGTGGCGGCACCCAGCCTCTCAGCCGCTCTACAGGGAGCTGCTCAGCTGCCCACCAGCGCCAGCATCGCCGCCATGGCTGCCGCCGCGGGCCTTAATCCTGGGCTCATGGCGTCCTCACAGTTCGCCCCTGGCGGGGCTCTTCTGAGTTTGGCACCCGGTGGTCTCGGAAGCGCTTTGAGTCCGGCATTGATGAGCAACAGCACCTTGGCCACAATCCAAGCTTTGGCATCTAGTGGCACCTTGCCCATAACATCTTTGGATGGGAGCGGGAACCTGCTGTTTGCCAACACCAGCGCTGGCAGCACTCCGAACCTGGTGACGGCGCCTCTCTTTCTGAACCCTCAAAACTTGTCGCTGCTCGCCAGTAACCCGGTCAGCCTGGTGTCTGCAGGAGGAGCTGCGGGTGCCGCCGGAGCCCTCAACCTGCACTTCACCGCTGATGCCCACCAGAGCGCTGTCACCACGGCAACTATGCCTGCCTCCACCATCACCACGGCCTCCAAGGCCCAGTGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0030154 cell differentiation biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2422 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Orthologous to human POU2F1 (POU class 2 homeobox 1).

Ensembl:

ensembl_id ENSDART00000144272

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075164 lncRNA upstream 38032 34286754 ~ 34296124 (+) True XLOC_037285
TCONS_00073370 lncRNA upstream 107197 34222019 ~ 34226959 (+) True XLOC_037283
TCONS_00075163 lncRNA upstream 325590 33997269 ~ 34008566 (+) False XLOC_037279
TCONS_00073363 lncRNA upstream 327318 33997301 ~ 34006838 (+) True XLOC_037279
TCONS_00075162 lncRNA upstream 328574 33997142 ~ 34005582 (+) False XLOC_037279
TCONS_00074919 lncRNA downstream 21209 34370860 ~ 34378332 (+) False XLOC_037287
TCONS_00074920 lncRNA downstream 21956 34371607 ~ 34378100 (+) False XLOC_037287
TCONS_00074921 lncRNA downstream 22485 34372136 ~ 34373543 (+) False XLOC_037287
TCONS_00074922 lncRNA downstream 23197 34372848 ~ 34374055 (+) False XLOC_037287
TCONS_00074923 lncRNA downstream 23197 34372848 ~ 34374415 (+) False XLOC_037287
TCONS_00073372 mRNA upstream 90189 34232503 ~ 34243967 (+) True XLOC_037284
TCONS_00073371 mRNA upstream 95176 34230067 ~ 34238980 (+) False XLOC_037284
TCONS_00073369 mRNA upstream 106684 34221997 ~ 34227472 (+) False XLOC_037283
TCONS_00073367 mRNA upstream 171782 34148714 ~ 34162374 (+) False XLOC_037282
TCONS_00073377 mRNA downstream 374 34350025 ~ 34378674 (+) True XLOC_037286
TCONS_00073378 mRNA downstream 30648 34380299 ~ 34389875 (+) True XLOC_037288
TCONS_00073380 mRNA downstream 47865 34397516 ~ 34428152 (+) False XLOC_037290
TCONS_00073379 mRNA downstream 47865 34397516 ~ 34428152 (+) False XLOC_037290
TCONS_00073381 mRNA downstream 48192 34397843 ~ 34423999 (+) False XLOC_037290
TCONS_00073362 other upstream 497686 33810446 ~ 33836470 (+) True XLOC_037278
TCONS_00073351 other upstream 1088401 33244198 ~ 33245755 (+) True XLOC_037270
TCONS_00073341 other upstream 1152804 33180682 ~ 33181352 (+) True XLOC_037264
TCONS_00073333 other upstream 1251975 33074680 ~ 33082181 (+) True XLOC_037261
TCONS_00073322 other upstream 1682084 32649076 ~ 32652072 (+) False XLOC_037255
TCONS_00073383 other downstream 76077 34425728 ~ 34429112 (+) False XLOC_037290
TCONS_00073385 other downstream 76124 34425775 ~ 34429120 (+) False XLOC_037290
TCONS_00073386 other downstream 76640 34426291 ~ 34429220 (+) True XLOC_037290
TCONS_00073390 other downstream 441099 34790750 ~ 34790887 (+) True XLOC_037293
TCONS_00073397 other downstream 619799 34969450 ~ 34969567 (+) True XLOC_037296

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00014423 True 2052 mRNA 0.54 15 CM030128.1 13655238 ~ 13689188 (+)