RNA id: TCONS_00074923


Basic Information

Item Value
RNA id TCONS_00074923
length 612
lncRNA type intronic
GC content 0.39
exon number 4
gene id XLOC_037287
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 34370860 ~ 34378332 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gaggtctaagtttaacctaagtgccgtgttgctgatgaacatctttatatgcaaaaccggagcacccagagaaaacccacgcaaacgcagagagaatttgcaaactacacacagaaatgcctgctgATCCAGCTGCGGCTCGAGTCAGcatccttgcttattggatgcctgattgcagttcaactccaaactcagttggaccagctgatcagtgtcttcagtattaccacaagctactgggcagatgtgtggacagctatgagccaaacttgggacgtttggtttttagGTGTGACCGTCTGGgcagcagaaacaagacaactaatcatagttgagttgagattagtattattaacttgactagtttggttgcagacttgttcaatacttaacaatttgtataagttacaagatcaatggtcctgctatcaatgtttttgtaacttaaattcattacagtttagatacaatcaaatgttcaaaccatctctgagtgaatgacatcaaggaaacaggatcaaaagatcattcattatagaccgtttcataggtaacagcacatcctttgtgaaaaataatttatttttgtgccatcattacaagacaaaatac

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0022607 cellular component assembly biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0065003 protein-containing complex assembly biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0030163 protein catabolic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0043632 modification-dependent macromolecule catabolic process biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0043933 protein-containing complex subunit organization biological_process
GO:0006457 protein folding biological_process
GO:0010467 gene expression biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0010498 proteasomal protein catabolic process biological_process
GO:0010499 proteasomal ubiquitin-independent protein catabolic process biological_process
GO:0019941 modification-dependent protein catabolic process biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0019773 proteasome core complex, alpha-subunit complex cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0044464 obsolete cell part cellular_component
GO:0005829 cytosol cellular_component
GO:0005832 chaperonin-containing T-complex cellular_component
GO:0005839 proteasome core complex cellular_component
GO:0005840 ribosome cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0005854 nascent polypeptide-associated complex cellular_component
GO:0101031 chaperone complex cellular_component
GO:1905368 peptidase complex cellular_component
GO:1905369 endopeptidase complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005623 obsolete cell cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0000502 proteasome complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0070003 threonine-type peptidase activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0004298 threonine-type endopeptidase activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0031369 translation initiation factor binding molecular_function
GO:0003743 translation initiation factor activity molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075164 lncRNA upstream 76724 34286754 ~ 34296124 (+) True XLOC_037285
TCONS_00073370 lncRNA upstream 145889 34222019 ~ 34226959 (+) True XLOC_037283
TCONS_00075163 lncRNA upstream 364282 33997269 ~ 34008566 (+) False XLOC_037279
TCONS_00073363 lncRNA upstream 366010 33997301 ~ 34006838 (+) True XLOC_037279
TCONS_00075162 lncRNA upstream 367266 33997142 ~ 34005582 (+) False XLOC_037279
TCONS_00074930 lncRNA downstream 1113 34375528 ~ 34377803 (+) True XLOC_037287
TCONS_00075165 lncRNA downstream 16036 34390451 ~ 34391153 (+) True XLOC_037289
TCONS_00073382 lncRNA downstream 41986 34416401 ~ 34419553 (+) False XLOC_037290
TCONS_00073391 lncRNA downstream 448434 34822849 ~ 34828098 (+) False XLOC_037294
TCONS_00073392 lncRNA downstream 452250 34826665 ~ 34828098 (+) True XLOC_037294
TCONS_00073374 mRNA upstream 20231 34319333 ~ 34352617 (+) False XLOC_037286
TCONS_00073373 mRNA upstream 20236 34319333 ~ 34352612 (+) False XLOC_037286
TCONS_00073376 mRNA upstream 23197 34334156 ~ 34349651 (+) False XLOC_037286
TCONS_00073375 mRNA upstream 30585 34331368 ~ 34342263 (+) False XLOC_037286
TCONS_00073372 mRNA upstream 128881 34232503 ~ 34243967 (+) True XLOC_037284
TCONS_00073378 mRNA downstream 5884 34380299 ~ 34389875 (+) True XLOC_037288
TCONS_00073380 mRNA downstream 23101 34397516 ~ 34428152 (+) False XLOC_037290
TCONS_00073379 mRNA downstream 23101 34397516 ~ 34428152 (+) False XLOC_037290
TCONS_00073381 mRNA downstream 23428 34397843 ~ 34423999 (+) False XLOC_037290
TCONS_00073384 mRNA downstream 51321 34425736 ~ 34429575 (+) False XLOC_037290
TCONS_00073362 other upstream 536378 33810446 ~ 33836470 (+) True XLOC_037278
TCONS_00073351 other upstream 1127093 33244198 ~ 33245755 (+) True XLOC_037270
TCONS_00073341 other upstream 1191496 33180682 ~ 33181352 (+) True XLOC_037264
TCONS_00073333 other upstream 1290667 33074680 ~ 33082181 (+) True XLOC_037261
TCONS_00073322 other upstream 1720776 32649076 ~ 32652072 (+) False XLOC_037255
TCONS_00073383 other downstream 51313 34425728 ~ 34429112 (+) False XLOC_037290
TCONS_00073385 other downstream 51360 34425775 ~ 34429120 (+) False XLOC_037290
TCONS_00073386 other downstream 51876 34426291 ~ 34429220 (+) True XLOC_037290
TCONS_00073390 other downstream 416335 34790750 ~ 34790887 (+) True XLOC_037293
TCONS_00073397 other downstream 595035 34969450 ~ 34969567 (+) True XLOC_037296

Expression Profile

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