RNA id: TCONS_00073378


Basic Information

Item Value
RNA id TCONS_00073378
length 2333
RNA type mRNA
GC content 0.41
exon number 6
gene id XLOC_037288
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 34380299 ~ 34389875 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACGTGACAGTGGTGTTTCCTGCTGCGAGAAACTAAACAAATCTGACCTACTGCGTTTGTAATCAGATGTAGATTGGGCACAACGGCAGCTCAAACAGACCATTTTCCTCTGCTGCATAACGACAGTTATCTGGCTAGATAGCTTGGAGACGCTTATTAATTACACTGACATCATCTGTTTTTATCGAGCGTGTTTTGATTTACTTTGGCAAGAAACATGATCTCTATCATCCCCAAACAAAACAGACCCGTCGGGGCAATTTTTAGCCTGCTGTTAGCTCTAACCATACACCAGACTTTGACCTCCAATGTTCCGACCACTGCGGCCACCCCTGAAACCAGCTCTCCTCCGGCCTCTCCTGTCACCCCAGGACCCCCAGAGCGGGGCAACTACAATGTCACCAATGCCAATGATACGGTCTGTCTCCTGGCACGCATGGCCCTCCAACTCAACATAAGCTTCACCTCAACCTCTCAGGGCAAGCTTGTCCAGGAGGTCTTGAACTTGCATCCAAACCTCGTTAAATTCTCTGGATCCTGTGAGTCGGACCGTGCATCTCTGATTCTCACAGAGGACAACATTACTCTGACTTTCAGCTTCTCTTTAAACTCCACATCAAACAAGTATCATCTTAGTGGTTTGGAGCTGTCAGCTTCATTGCCTGATATGGCTAagggtCTTGTGGTCAGAAACACCACACTGAACTACTTGGTGGGAACGCTGGGCCACTCTTACATGTGTCAGAAGGAAAAGACCTTGAGCGTCACACAAAATTTCTCTCTCAACACCTTCCAACTTCAAGTGCAACCTTTCGGTGTCAAGGGAGATTTTGGAGCAGCTGAGGAGTGCGAGTTGGATGAGGACGACATGTTGATCCCCATCGTTGTGGGCGCTGCATTGGCTGTTCTAGTGCTCATAGTGATCCTGGCGTACCTGATCGGCAGAAACAGGAGTCACGCCGGCTACCAGACCATCTAGACTCCCCTCATGAATCATCTTTAAGCCAGGATCTGGAGACGCCACTGATTTCTGCTCTAATCTGGACTGCAGCCATCTAGTTTTTAACCTGCCCTGCCCTCTGCTGGTGTCTCCCACTGCCTCTGCTCAGGTGGATCTGACCTTTCCTGGACTTTCTGTTGTATTATGTTAAACATAGTATAATTAATTCATACTAAAGGGCAAAAGAGGGGGGCTGTAGGTCAAGCTTGTTTCCAGCAACCAGATTAAGCTCATCTATCTGTTGTGTCATTTAGGCTTAATCTGGGTCTCTGAAAACATAGAATTTTTTGGTACCTCACATTCTTTAATTTAtcgttgtgtatttatttatagaactAGGGGGATTTAGGGAAACTGAGGATGGTTGTTACTCAGTCTAAAAGGGACTACaaatttgacactttttttttttttttttttttgggttaatAGTTGGGATTATAAAAGACAGGATTGCTTCTGAGATTCACTAGATTGGACATTTTATTGCCGTTAACAAAACCTTGCATAACAGTTTTGACTTGGATGTTAATTCTATCATTTTTAATAAGGAAAAGTTCGACCTGAGAGAATTTATTTTGTAGAATAGAGTACCTGTTGATGGGATTGTTCCCCCCAAAAAGGAAATTGAAATTAATTTACTTGCCTTCAAGTGATTGCAAAcctttttttagtttcttttgtctgatgaacaaaaagatattttgaatatgTTAGAAACATTTAACCAATCACTTCCATAATAATGAAAGCATACTATAGAGGTCAatcggtttccaacattcttctccatcattaaaaaaacaaacaaactcaaaatggctgagtaaatgataacagttTTAAGTTTGGGGTGAATTATCCTTTTAATAACACTAAATGTTTCTTTGTGTCCCCTCATACTACATATCAAAACTATATAACCCGCTTGCTTCCATTTAGCATGGTATTTGCAGACATTCAGAAGCATTAAAGGGAAATTCTGCTAGATTGCTGAAATATTATGGTTTTGCACTATGGGATGTACAAAGGGTACGATTTACACTGACATAAGCAGAACATTCTCAGCAACTTGAGGTAGGTTTAAATTATTATGGACCCAGGTAAATGGTTAACTGTTACAAACACAAGGAGTGCACTGAGAGAAACACCGTTTATCATAGGGTAAATGAATCTCTCCTTTATAATGGGCGTTCATATGGAATGATTGCATATGTGGAGTTGTTGTGGATATTGAAGTGCTGCCTTGATTGCTGTGAAGTTCATATTGTTTTAAGGGAATGCGATtctaaatttctaaataaaaatgaaaaataaataaaagatgaatTCTA

Function

GO:

id name namespace
GO:0072594 establishment of protein localization to organelle biological_process
GO:0005764 lysosome cellular_component
GO:0005765 lysosomal membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0031902 late endosome membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-9303 Predicted to be involved in establishment of protein localization to organelle. Predicted to be located in lysosome and membrane. Predicted to be integral component of membrane. Predicted to be active in late endosome membrane; lysosomal membrane; and plasma membrane. Is expressed in eye. Orthologous to human LAMP1 (lysosomal associated membrane protein 1).

Ensembl:

ensembl_id ENSDART00000131705

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00074919 lncRNA upstream 1967 34370860 ~ 34378332 (+) False XLOC_037287
TCONS_00074920 lncRNA upstream 2199 34371607 ~ 34378100 (+) False XLOC_037287
TCONS_00074930 lncRNA upstream 2496 34375528 ~ 34377803 (+) True XLOC_037287
TCONS_00074927 lncRNA upstream 3889 34372848 ~ 34376410 (+) False XLOC_037287
TCONS_00074929 lncRNA upstream 3889 34373486 ~ 34376410 (+) False XLOC_037287
TCONS_00075165 lncRNA downstream 576 34390451 ~ 34391153 (+) True XLOC_037289
TCONS_00073382 lncRNA downstream 26526 34416401 ~ 34419553 (+) False XLOC_037290
TCONS_00073391 lncRNA downstream 432974 34822849 ~ 34828098 (+) False XLOC_037294
TCONS_00073392 lncRNA downstream 436790 34826665 ~ 34828098 (+) True XLOC_037294
TCONS_00073393 lncRNA downstream 561067 34950942 ~ 34959774 (+) False XLOC_037295
TCONS_00073377 mRNA upstream 1625 34350025 ~ 34378674 (+) True XLOC_037286
TCONS_00073374 mRNA upstream 27682 34319333 ~ 34352617 (+) False XLOC_037286
TCONS_00073373 mRNA upstream 27687 34319333 ~ 34352612 (+) False XLOC_037286
TCONS_00073376 mRNA upstream 30648 34334156 ~ 34349651 (+) False XLOC_037286
TCONS_00073375 mRNA upstream 38036 34331368 ~ 34342263 (+) False XLOC_037286
TCONS_00073380 mRNA downstream 7641 34397516 ~ 34428152 (+) False XLOC_037290
TCONS_00073379 mRNA downstream 7641 34397516 ~ 34428152 (+) False XLOC_037290
TCONS_00073381 mRNA downstream 7968 34397843 ~ 34423999 (+) False XLOC_037290
TCONS_00073384 mRNA downstream 35861 34425736 ~ 34429575 (+) False XLOC_037290
TCONS_00073387 mRNA downstream 43178 34433053 ~ 34482698 (+) False XLOC_037291
TCONS_00073362 other upstream 543829 33810446 ~ 33836470 (+) True XLOC_037278
TCONS_00073351 other upstream 1134544 33244198 ~ 33245755 (+) True XLOC_037270
TCONS_00073341 other upstream 1198947 33180682 ~ 33181352 (+) True XLOC_037264
TCONS_00073333 other upstream 1298118 33074680 ~ 33082181 (+) True XLOC_037261
TCONS_00073322 other upstream 1728227 32649076 ~ 32652072 (+) False XLOC_037255
TCONS_00073383 other downstream 35853 34425728 ~ 34429112 (+) False XLOC_037290
TCONS_00073385 other downstream 35900 34425775 ~ 34429120 (+) False XLOC_037290
TCONS_00073386 other downstream 36416 34426291 ~ 34429220 (+) True XLOC_037290
TCONS_00073390 other downstream 400875 34790750 ~ 34790887 (+) True XLOC_037293
TCONS_00073397 other downstream 579575 34969450 ~ 34969567 (+) True XLOC_037296

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000009_03301176_03305406.mRNA True 951 mRNA 0.49 6 CI01000009 3301176 ~ 3305595 (+)