RNA id: TCONS_00075165


Basic Information

Item Value
RNA id TCONS_00075165
length 527
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id XLOC_037289
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 34390451 ~ 34391153 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTGCGTGTAGTTAGAACCGTCTATGTTCACCATTCAGTTGCGAAGGACTGTTATTGGCTCTCAGAAGTAATGTTATTTCTACACATCTTCCTGAGTTTAGTGATTGTTGCTGTAGAGAGACCTCCTGGCTCCATAAAGATTTTCTGAAGACATATAAACATCCTTTAGAacacaggaattgaggttgagacctatgctttagaACAACACCAGctctgtaaatattacttaaatcaACAGAATGTACCTGCATGAATGAGTGGCAGTCCTCTACATACTCTCCACGTGTGATCTGTTTAAAGCCTTCGCAGATTTCTGGGAGACTCTTTGCCTGTGAGATGAGGTTCTGATTGTGTCGAATTAGAGTCAAAGCCACACGGAACAGAATCTTGGATCCCTCATAGAAAAGACAGTCCCATATTCTTAGCACCGTCTGAGAAAATCACAATGGCAATCATAATTTTAAACATCAGTATCATAATACAATATTTTCAGAAAGATTGAAAGTTGTTTCATGACTGCTGATT

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0021536 diencephalon development biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0048513 animal organ development biological_process
GO:0007275 multicellular organism development biological_process
GO:0006413 translational initiation biological_process
GO:0001539 cilium or flagellum-dependent cell motility biological_process
GO:0048856 anatomical structure development biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0007389 pattern specification process biological_process
GO:0021983 pituitary gland development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0060285 cilium-dependent cell motility biological_process
GO:0007417 central nervous system development biological_process
GO:0060322 head development biological_process
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0003743 translation initiation factor activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00074919 lncRNA upstream 12119 34370860 ~ 34378332 (+) False XLOC_037287
TCONS_00074920 lncRNA upstream 12351 34371607 ~ 34378100 (+) False XLOC_037287
TCONS_00074930 lncRNA upstream 12648 34375528 ~ 34377803 (+) True XLOC_037287
TCONS_00074927 lncRNA upstream 14041 34372848 ~ 34376410 (+) False XLOC_037287
TCONS_00074929 lncRNA upstream 14041 34373486 ~ 34376410 (+) False XLOC_037287
TCONS_00073382 lncRNA downstream 25248 34416401 ~ 34419553 (+) False XLOC_037290
TCONS_00073391 lncRNA downstream 431696 34822849 ~ 34828098 (+) False XLOC_037294
TCONS_00073392 lncRNA downstream 435512 34826665 ~ 34828098 (+) True XLOC_037294
TCONS_00073393 lncRNA downstream 559789 34950942 ~ 34959774 (+) False XLOC_037295
TCONS_00075166 lncRNA downstream 579690 34970843 ~ 34973324 (+) True XLOC_037297
TCONS_00073378 mRNA upstream 576 34380299 ~ 34389875 (+) True XLOC_037288
TCONS_00073377 mRNA upstream 11777 34350025 ~ 34378674 (+) True XLOC_037286
TCONS_00073374 mRNA upstream 37834 34319333 ~ 34352617 (+) False XLOC_037286
TCONS_00073373 mRNA upstream 37839 34319333 ~ 34352612 (+) False XLOC_037286
TCONS_00073376 mRNA upstream 40800 34334156 ~ 34349651 (+) False XLOC_037286
TCONS_00073380 mRNA downstream 6363 34397516 ~ 34428152 (+) False XLOC_037290
TCONS_00073379 mRNA downstream 6363 34397516 ~ 34428152 (+) False XLOC_037290
TCONS_00073381 mRNA downstream 6690 34397843 ~ 34423999 (+) False XLOC_037290
TCONS_00073384 mRNA downstream 34583 34425736 ~ 34429575 (+) False XLOC_037290
TCONS_00073387 mRNA downstream 41900 34433053 ~ 34482698 (+) False XLOC_037291
TCONS_00073362 other upstream 553981 33810446 ~ 33836470 (+) True XLOC_037278
TCONS_00073351 other upstream 1144696 33244198 ~ 33245755 (+) True XLOC_037270
TCONS_00073341 other upstream 1209099 33180682 ~ 33181352 (+) True XLOC_037264
TCONS_00073333 other upstream 1308270 33074680 ~ 33082181 (+) True XLOC_037261
TCONS_00073322 other upstream 1738379 32649076 ~ 32652072 (+) False XLOC_037255
TCONS_00073383 other downstream 34575 34425728 ~ 34429112 (+) False XLOC_037290
TCONS_00073385 other downstream 34622 34425775 ~ 34429120 (+) False XLOC_037290
TCONS_00073386 other downstream 35138 34426291 ~ 34429220 (+) True XLOC_037290
TCONS_00073390 other downstream 399597 34790750 ~ 34790887 (+) True XLOC_037293
TCONS_00073397 other downstream 578297 34969450 ~ 34969567 (+) True XLOC_037296

Expression Profile

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