RNA id: TCONS_00073379


Basic Information

Item Value
RNA id TCONS_00073379
length 9549
RNA type mRNA
GC content 0.42
exon number 30
gene id XLOC_037290
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 34397516 ~ 34429575 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

attttatttggtcatTTGAATTAACATAAAATATACTGATACATGCCAAACCGGATATTCTGTTCGTCCGTCTTTTTTACAAAGTAAAAGTCCTCCAGAttcttcttttattattcagttaATGTCGCAGACCTTTTTCCACTCATCAGACAGACGCaacttattctttaaaaaaatcaagttttgtATTTCTATGTACTGTGAAAGATATGACcagatataaaaaacaaaaccaactattttaaaatcatactttTGCCttgcagacttttattttaaataactttccAGCGCCATTTAGGGAAAGAACAGTTTTGTTTCCTGCTTCAGCTCCAGTCGGTGATGGCGGGGCTCCAGTTCTCCACATCTTGCACGTTAAGAGACTCATTCCTCGTTTCTCCATGGGATGAAATCGCTTCCGCTGCCTCTAAACATTAGGACGTACGGCTGATAATATTCGCTTACTGATTTGCGGTAAACGCGAGTGGAAAGAGTCGGAGCAGTAACCGCACATCGCTCCCGCTGTATTTTAAAATGGCTCCAGTTCAGATCGGTTCGGACGGGCAGCTGGTGCCCGCCGGGGGTCCGACCTCAACCCCGCAGCCTCCTCCAGGAGCCCCGGCAACCCAAGGAGTACGGCTGAGCCTTCTGATCGAGTTTTTGCTACAGCGAACCTATCATGAGATCACACTGCTGGCTGAACTACTTCCTCGTAAAACAGACATGGAAAGAAAAATTGAAATTGTTCAGTTTGCCAGTCGGACACGTCAACTCTTTGTGCGTCTGCTTGCTCTTGTCAAATGGGCAAGTAATGCAGGAAAGGTGGAGAAATGTGCGATGATCTCCTCATTTCTGGATCAACAAGCATATTTATTTGTTGACACGGCTGACCGGCTGGCATCACTAGCCAGGGATGCGTTGGTACATGCACGTTTGCCTAGTTTTGCCATCCCTTTTGCCATTGATGTACTAACCACAGGGTCTTATCCACGTCTGCCCACGTGCATCCGAGATAAAATCATTCCTCCCGACCCAATAACCAAAGCAGAGAAGCAGACCACGCTAAATCAGCTCAATCAAATCCTGCGACACAGACTAGTCACCACTGATTTGCCTCCACAGCTGGCTAACTTAACCGTGGccaATGGACGAGTCAAGTTTCGTGTTGAGGGTGAATTTGAAGCAACGCTGACGGTGATGGGGGATGATCCTGATATTCCCTGGAGACTTCTTAAACTAGAGATTCTGGTTGAGGATAAGGAAACTGGAGatGGACGGGCATTGGTCCATAGCATGCAGGTGAATTATATCCACGAGCTGGTCCAGTCCCGCTTGTTTGGAGATGACAAGCCTCTTCAGGACATGTACACCTGCCTCCATTCATTCTGCCTGTCACTCCAACTGGAGGTTCTGCACTCTCAGACTCTAATGTTAATCAGAGAGCGGTGGGGGGATCTGGTGCAGGTCGAGCGCTACATCCCTGCAAAGTGCCTCACATTATCTGTCTGGAAtcaaCAGGTGCTGGGTAGAAAGACTGGCACGGCATCTGTTCACAAGGTTACCATAAAAATCGATGAAAGCGATGGTTCTAAGCCATTACAGATCTCCCATGAGCCTCCACTGCCTGCCTGTGATTCCAAATTAATGGAAAGAGCCATGAAGATCGACCATCTCTCAGTGGAAAAGCTGTTGATTGATAGTGTACATGCTCGCTCACATCAGAAACTGCAAGAACTTAAAGCCATTCTGAAAAGTAGCAACCCTAATGACAACTcctttataGAGACTGCTCTGCCCACGCTGGTCATACCAATACTGGAGCCCTGCGGTCGATCTGAGTGCCTCCACATATTTGTCGATCTGCATTCAGGAATGTTTCAGCCAATGCTCTACGGAGTCGATCAATCCATGCTGGACGATATTGAGAAGAGTATCAACGATGACATGAAGCGCATCGTCACATGGTTACTACAGCTAAAATTCTGGTTGGGCGAGCAGAGATGTCGGCAATCCGTGAAACATCTTCCCACACTGTGCACAGACACTCTCCATCTATCGAACCTAACCACACATCCTGTGGGCAACCTTTCAAAACATCGCCTCTTCATCAAACTCACTCGGCTCCCACAATACTATATTGTGGTGGAGATGTTTGACGTGCCCAGCAATCTGACAGAGCTTCAGTATAAGTACTACTTCCTGTCTGTGAGTCAGATGGAGAGCGAGGACGGACTTCCTTCTGCTCAGCTGTTTAGGCACTTTAAGCCCAACCTGGAGGAGCTTGTGCAGGACATTTCATCTTGTCGAATGGTTCGCCCTGGGACCAAGAGGAAGTTGTCAGGAGAGCAAAGTGCCGTTGAACCAAAGAAACCCAAGAGGTCTGGAGAGATGTGTGCCTTTAATAAGGAGCTTGCTCACCTGGTGGCCATGTGTGACACCAACATGCCCCTTATCGGACTGCGCTCTGAGTTGTCCAATATGGAGATTCCGCATCAGGGAGTGCAGGTCGAAGGAGACGGCTGTAGTCATGCCATACGTATTCTGAAAGTTCCACCTTGTATGGCAGTTGGTGAAGAAACCAGAAAAGCTCTAGAGCGCTCTCTGCTGGACTGCACCTTCAGACTACAGGGACGCAATAATCGCACATGGGTGGCAGAATTGATTTTCTCCAGTTGCCCACTCAACAGCACATCCATCAAAGAGCAAGCTTCAACGCGGCATGTCTACCTGACATATGAGAATCCTCTGTCAGAGCCAGTGGGTGGCAGGAAAGTGGTGGAGATGTTTTTGAATGACTGGAACAGCATTAGTAAGCTTTATGAATGTGTGCTGGAGTTCTCGCGCTCTTTAACTGAAATGCCCTCCTATCTGAGCCTTTTCTCGGAGATACGGTTGTACAATTATCGGAAACTGGTTCTGTGTTATGGCAGCACTAAAGGCAGCTCGGTAACGATACAATGGAACTCAGTGACACACCGATACCATCTGGCCCTGGGGACTGTGGGGCCCAATTCAGGCTGTAGCAACTGTCACAACATAATTCTGCACCAACTTCAGGAGATGTTCAACAAGACACCCAATGTTGTACAACTTCTGCAGGTCCTCTCAGATACTCAGGCTCCTCTAAATGCCATCAACAAGCTTCCCACAGTGCCTATGTTGGGTCTTACCCAAAGGACTAATACGGCGTACCAGTGCTTTTCCATCCTGCCCCAGTCGCCCACCCACATCCGCCTGGCCTTCCGCAACATGTACTGCATTGACATCTACTGCCGAAGCAGAGGGGTGGTGGCCATCCGGGATGGGGCCTACAGTTTGTTTGACAACACTAAGATAGTCGAAGGCTTCTATCCAGCTCCTGGACTTAAGaCGTTCCTGAACATGTTTGTGGATAGTAACCAGGATGCTCGAAGACGCTCCGTCAATGAAGACGACAACCCTCCCTCGCCAATTAGCATGGAGGACACCTTCATGCCCCACACCCAGACACAACCTCCAGGAAGAGGGGTGTATCCGCCCCTTACATCACCTCCCAACCCGTACCATGTGCCTCCTTCACCGTCCATGATCACAACGCAATCTCCAGGGAACATCCACGCAGCCAATTCCCCTAGTGGAGCTCTGCGGGCCCCTTCTCCCTTTGGGCCCACCCCTTCTCCCTCTTCTCTGGGCATTTCTATGGGGCAGACCTCCAACTTTGCCAGCCCACATGGAACTCTTGACCCAAGTTCACCATACACACTAGTGTCCGCCAGCCCTAGGGTAGGCCCCTGGCCAGGTTCCCCACAGGTTTCTGGACCTTCTCCTGGAGCACGAATCCCTGGCATGTCACCAGGAAACCCTTCTTTGCACTCACCCATTCCAGACCCATCCCACTCCCCTCGAGCTGGTACCAGTTCACAGGCGATGCCTCCACCTCGTAAACTGCCACAGCGGTCTTGGGCAGCCTCTATTCCCACCATCCTCACCCACAGCAAGCTACATGTGTTGCTTCTGCCTTCACCCATGCCATGCCCGGTCCCAGGGCTGGCAGGCAGCTACCTGTGCTCACCTCTGGAGCGCTTCCTGGGCTCAGTCATCATGAGACGACACCTGCAGAGAATCATCCAATTAGAACCCAACCTCACTATTGTGAACTCAAATGAACCAGGCGTCATCATGTTTAAAACAGAAGTGCTTAAATGCAGAGTGGCTCTCAACCCTAAATCCTACCAGACTCTCCAGCTGAAAGTCACACCAGAAAACACGGGACCCTGGTCACAGGAGGAGCTGCAGGTCTTGGAGAAGTTCTTTGAGACCAGGGTTGCAGGACCACCCTTTAAGTACAACACACTTAATGCCTTTACAAAACTGTTGGGAGCTCCCACCAACATACTCAGAGACTGTGTTCGCATCATGAAATTGGAGTTGTTCCCAGACCAGGCGGCTCAGTTGAACTGGAATGTGCAGTTCTGTCTGACCATCCCACCCAGCGCTCCTCCCATTGCCCCACCAGGAACCATCGCTGTGGTGCTAAAGACCAAGATGCTCTTCTTTCTCCAGCTGACCCAGAGGTTACCAGTGCCCCAGGAGCCCATCAGTATCATCGTGCCTATTGTGTATGACATGGCCACTGGACTGACCCAACAGGCCGACATCCCTCGCCAGCACAGCTCTTCAGGAGCCGCGGCCCTGATGGTCAGCTCCATCCTCAGACGCTTCAATGAGCACCATCCACCACGACCAGGGGAGTGCACAATATTTGCAGCTGTTCACGAGCTCATGGCTAATCTGACGCTAAACTCCGGTGGACGCCCATAAGTTGGTGTCTCTTGTAGGAAACTCATCAGACTGATTCTAAATGAATACGTTCAGCCCTGACTCCTGGGGCATTCAGGTTTTGTGCTGCAACCAATGGGCTCTTCTGCTGGTGTATCATATTGTCGTTAAAGGGAGCGGAAGAATGAtggaactttttttattgtattatgaaGCATGTAAATTAAAAATGGTTACAATAGCAggacttctttttaaaaatagcttggGAAAGTTCTGCTGatgaatttgttatttttttcagatgCACTTCTTAAGCAAACGATTGTGATAGAAAAGATGTTTAACTACAGCTGTATTTTTTCATTTAAGACTTTGcagaaaatgtctttttttctaaTACAAGTTATCAATGCTGTGTAAGCGTTGATGTTTTCTTTATCAGCAcactatttaattttacattttttttgtgcttGCATTGCTTTGATTTCTTAGTATTCCTGCCACTTGAGACATGAGTGACAAACCTTATAAATAAGCCGTGTTTTAATGTATTTCATTGGAATCATGCAAGAGGTCCAATATTTTTCATGTCTGTGTTTATTACTATTtaataaacattgaaaataacTCCATCCTTTCGTTAATAAATCCCTGTTTGTTTGCTGATgtgaaatgaaatatatttagAGAATGACATGAAATCAGTTTTCCTTTATGTGTAGCATTCAATGAGTAATATTATATTCtaattgttttattgctttatttttaaatggttaagTCAATGGTCTCAATCTCAATtactggagggccacagctctgcaaaaTTTAGCTCTAACCACCTCCaattcacacctgcttaatagtcttgtagtcttgaacaccttatTAGTTGGGTCAGCTGTTTccttagggttggagcaaaaatgtgcagagctgcggccctccaggaatccagtttgagacctatgggtTAAATCAATGTGTGAAGTCTAAATATATTTGCAATAAAGGCAAATGAAATTCTCTCAATGACAGTATGACCTGCATTTAAGCCAATATGTGTATTTTCTGAGTATTGTCTGACAAACAACAGGAGTTGACCACAAAAATCGCCAGAAATAGGtggttgctagaagggatacagctgcagtaaAAAGTTaaagagaaatatttttattatttattaaattgcccactcattatattttattaaagtcttccccaaccatcacggtTATGTAAAAACAGTCGTTATACAgagaattttttgtattttatattcagTTATCAAATAAATTACGCCAACGTCTTCCTaaaaccatcacagtactgtaaaacagTAGTTATACAGAGAATTATTCAACtactcatattatttattaaattgcccaATAAATTACGCCAACATCTTTCTAAAATCATAATGgttatgtaaaaacagtaattatacagagaaTTATtcgtaatatattaaataatcaaGTAAGTTACGCCAACGTCTTCCCCAAcgatcacagtactgtaaaaacagcaattataaagagaattattcatattatttattatattgccCAATAAAATATGTCATCTTccctaaccatcacagtaatgtaaaacagtaattatacagaaaattatttacattattgatTGAATTGCTCAATAAATTACGCCCCTATCatgacagtaatgtaaaacagtaattatacagagaattattcatattatttattattttgccctATAAATTAATGCGTCTTCCCTAactatcacagtaatgtaaaacagtaattatacagagaataatttatattattaataaaataaaattacgccccaaccatcacagtactgtaaaaacagtaaatatacaaagaattattcatattatttattaaattgtccaataaattgtattttattaacacctTGACCCTACACCtccccctcacagtaatgtaaaaatattaaatattgttgtacagtgtcacaaaaattgtGCAATATTGatgtatctgcagctgtatcccatctagactttacctcAGAAATATGATGTAAAAATACCCTCATCCAATCGAATGTGATTGGTTCATCCGCAACAGCGCAGAAAAAAAAGAACGCGTTACCTCGTGAGAAATCCGTGCATAGCAGATTTAACTAGCgacaggaaataatattttatatacataaatgcaACTCTGAAATCTTATAAAAGTCGATAAACTgaaaatttatataaatgttattttgacTCCTCATTCCTGACTAATTACAAAACCGCAAAGCCCCGCCTATTCTTACACTTGTGTGATAAAAATGATCATTCTTCTGGTTTTATTCTATTTCGGTACCAGGTAATGCATTTGGTGGGTTCTTGTCGTTAACCACGCCTTTTATTTACATCTCAGTCCGCTGTGTGGATGAGCACCATGGACTATGAAGAAGAGAACCACTGTACGGGTCTCTTCGTAACGTCAGCGTGACAAACGCCGTTGATGGATGAATTAACCAGTAAATTCGGTGTTAATAATCATATGAATTTATGTCACTGGTTGGGTTATTACGGTGACGATGGCAGCAGTCAGTCTGACGGATCCGCTTTGCAAGCCTTATTCGTACAGTGCACATTTTAAAGGTAATTCCGATCTCTTCAGTAATGGACGCTTCATTCTTATGATCACAATCATCTGTCTGAATGTGCTTCATTTCTCGATTATTGAACGCTTACAGTGGAGGTGTGCCTGAGGAAACCGCTGATGCCCATCCATCTGAGCAGTGAGCAGGTGGCACTGGAGATGCTGTGTCTCTGCGGTCAGCTGGATCTGCTGATCAGAGCTCAGGTCCATCAGGTCAGAGACACATGATAAATACTGATATGCTATCTCCCAATATTCACATGTTTAATTTACGTCAGCAGAATCGGGAGCAGTTTAAACAGGATACAAGTCCTGTGGAGTCTGAATGCTTCCAAAGACAAGGTGAGCATAAAACTGCAAGAATATACTGCtcaaataaagggaacacttgggagttagattgtgttgtttaagtgttgccgtcattttatttttttgagcagtataatttgtttttattaaattggaTGCACTagaactttattaggtactcttCGCTAGGTTTAAAcctcttttgtcttcagaactacTTTGATGTATTGTACCATAGATTCCCTAAGAAGCATTGATACGAGGCTCGATCCAGTCTTTTACGTCATCCACACCAAACTCTGAATTTACCATTTGAATGTTCCTGCAGAAATTAAGACTCAAGATCACACAACCTTTTTTACAATCTCTTATTGTCTAGTTTTGGTGTGCTTGTACGAGTTGTGGCCTCAGTTTGCAGTTTTTTAAGCTGACGGGAGAGTCACCAGTGTACTTTTGTTGCTTTTGCTCATCTGTTTCAAGGTTGGatttgttgtgcattcagagatgctttgCTGCAGTCCTCTGATGTAACAAGTGGTTATCTGAGTTACTGTTCAAACCAGCAGGGGAgtagcagacattttaaaagtgcgGGGGACAGCTGAATGAGATCCAAAAGTTacattcatataattattaatcacctgtttctaaatggtcatAGTAAGGGGGACGAATCCTTAAAAAGGCATTTTAACCACTCAATTACCCCTTATATCTGCATATCTTCTCTATTTTGGacaattatttgtaaattatacAGTTGGATGTACTTGAAAAACACATAGATCAGTAATTTCTGAACATTCGTGCCACGTTCAAAGACACAATTCACTTTTCTATtcttatgtaatttaattttttaacttaAAGTGTTAGTttatcaaaaaaatttaattatgatATTAATTACTCATTCTTGTGTCTTTTTgaacccctgagacctttgttcatcttcagaatacaaattaagatatatTAGGTGAACTCAGTCTGAAATATCTCTGACCCTACATAGACACCAAGGCTCCCGACTCATTCAAAGTCAAGAAAAATTCTCAAAACAGACTATAAATGTCTTCAGCAGTTCAATTGGAATATTATTAGGCTACTAGAATCATTTTGTGTgtgcaacaaacaaaaataactttattaaacACTTTAGAGGGTTACATATGTGCACAGTGCCCATGAATGTGCAcgatatactgacactgaggaaaaGAAATTGttgaataaagttgttcattttattttatgtgcacacaaaagcattttcataacttcataatattctgattgaaccactgaaggcatatgttgtgttttgagGATGATTTTTGGTTTCTTTCTATACTTTAAATGAGCCGTGAACTTTGCTGTATGTGAAGGTTGAGGGGCTCTCAGGTTTCACCTACAATATCTTGATTTTTGTTCTAAAGAGACACAGAGACCTTAtaagtttggaacaacatgagagtgATTAACCCTTTAAGCAGATTGTATGGACCACGTCAACATGCCCAACTGcattaaagtggccggtaagtgtatctACAACAACTAAACTGGTTTTGTCAATAGGGGCTGAGATAATATATCAGATGAACCAGTGTCTTGAACATCTGTCAGACCCAGAGCTTCAGCTTGAGGTAACTAATCACTGGTTAATCATGATGCTTAACTTGATGTTTGCATGATGTATTCCTGTTTATTTCCATTTCTTAGGAGTATTTGGATACTTTAGGATTATCAACTTTGTTCCCTCGTGTGGAAGTTTATATGATACATGGCAGCCCTATTGACATGCTGGAAAGACCTCCTTCAGACG

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0048514 blood vessel morphogenesis biological_process
GO:0019827 stem cell population maintenance biological_process
GO:0021591 ventricular system development biological_process
GO:0014033 neural crest cell differentiation biological_process
GO:0007420 brain development biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0070847 core mediator complex cellular_component
GO:0005634 nucleus cellular_component
GO:0016592 mediator complex cellular_component
GO:0003712 transcription coregulator activity molecular_function

KEGG:

id description
ko04919 Thyroid hormone signaling pathway
ko03021 Transcription machinery

ZFIN:

id description
ZDB-GENE-030131-8867 Predicted to enable transcription coregulator activity. Acts upstream of or within animal organ development; blood vessel morphogenesis; and stem cell population maintenance. Predicted to be located in nucleus. Predicted to be part of core mediator complex and mediator complex. Is expressed in head and trunk. Orthologous to human MED14 (mediator complex subunit 14).

Ensembl:

ensembl_id ENSDART00000011304

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075165 lncRNA upstream 6363 34390451 ~ 34391153 (+) True XLOC_037289
TCONS_00074930 lncRNA upstream 19713 34375528 ~ 34377803 (+) True XLOC_037287
TCONS_00074927 lncRNA upstream 21106 34372848 ~ 34376410 (+) False XLOC_037287
TCONS_00073391 lncRNA downstream 394697 34822849 ~ 34828098 (+) False XLOC_037294
TCONS_00073392 lncRNA downstream 398513 34826665 ~ 34828098 (+) True XLOC_037294
TCONS_00073393 lncRNA downstream 522790 34950942 ~ 34959774 (+) False XLOC_037295
TCONS_00075166 lncRNA downstream 542691 34970843 ~ 34973324 (+) True XLOC_037297
TCONS_00073399 lncRNA downstream 577939 35006091 ~ 35010396 (+) True XLOC_037298
TCONS_00073378 mRNA upstream 7641 34380299 ~ 34389875 (+) True XLOC_037288
TCONS_00073377 mRNA upstream 18842 34350025 ~ 34378674 (+) True XLOC_037286
TCONS_00073374 mRNA upstream 44899 34319333 ~ 34352617 (+) False XLOC_037286
TCONS_00073387 mRNA downstream 4901 34433053 ~ 34482698 (+) False XLOC_037291
TCONS_00073388 mRNA downstream 6791 34434943 ~ 34477553 (+) True XLOC_037291
TCONS_00073389 mRNA downstream 213085 34641237 ~ 34647695 (+) True XLOC_037292
TCONS_00073394 mRNA downstream 522790 34950942 ~ 34968429 (+) False XLOC_037295
TCONS_00073395 mRNA downstream 524051 34952203 ~ 34962725 (+) False XLOC_037295
TCONS_00073362 other upstream 561046 33810446 ~ 33836470 (+) True XLOC_037278
TCONS_00073351 other upstream 1151761 33244198 ~ 33245755 (+) True XLOC_037270
TCONS_00073341 other upstream 1216164 33180682 ~ 33181352 (+) True XLOC_037264
TCONS_00073333 other upstream 1315335 33074680 ~ 33082181 (+) True XLOC_037261
TCONS_00073322 other upstream 1745444 32649076 ~ 32652072 (+) False XLOC_037255
TCONS_00073390 other downstream 362598 34790750 ~ 34790887 (+) True XLOC_037293
TCONS_00073397 other downstream 541298 34969450 ~ 34969567 (+) True XLOC_037296
TCONS_00073405 other downstream 589695 35017847 ~ 35022314 (+) False XLOC_037299
TCONS_00073409 other downstream 1001050 35429202 ~ 35429316 (+) True XLOC_037302
TCONS_00073415 other downstream 1433932 35862084 ~ 35863842 (+) True XLOC_037304

Expression Profile

//