RNA id: TCONS_00073385


Basic Information

Item Value
RNA id TCONS_00073385
length 893
RNA type nonsense_mediated_decay
GC content 0.45
exon number 6
gene id XLOC_037290
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 34397516 ~ 34429575 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCTCAGTCCGCTGTGTGGATGAGCACCATGGACTATGAAGAAGAGAACCACTGTACGGGTCTCTTCGTAACGTCAGCGTGACAAACGCCGTTGATGGATGAATTAACCAGTAAATTCGGTGTTAATAATCATATGAATTTATGTCACTGGTTGGGTTATTACGGTGACGATGGCAGCAGTCAGTCTGACGGATCCGCTTTGCAAGCCTTATTCGTACAGTGCACATTTTAAAGTGGAGGTGTGCCTGAGGAAACCGCTGATGCCCATCCATCTGAGCAGTGAGCAGGTGGCACTGGAGATGCTGTGTCTCTGCGGTCAGCTGGATCTGCTGATCAGAGCTCAGGTCCATCAGGTCAGAGACACATGATAAATACTGATATGCTATCTCCCAATATTCACATGTTTAATTTACGTCAGCAGAATCGGGAGCAGTTTAAACAGGATACAAGTCCTGTGGAGTCTGAATGCTTCCAAAGACAAGGGGCTGAGATAATATATCAGATGAACCAGTGTCTTGAACATCTGTCAGACCCAGAGCTTCAGCTTGAGGAGTATTTGGATACTTTAGGATTATCAACTTTGTTCCCTCGTGTGGAAGTTTATATGATACATGGCAGCCCTATTGACATGCTGGAAAGACCTCCTTCAGACGCAAGTGCTTATTTCTCTCAAAGACATTGTACCATTGTCCATCATAAGAAAGGATATTGAAGCCAATTTCAAGCAGTTGAAGATGTCTCTTTTGACAGAGGACGGGTCCAAGCAGGATCCTCAGCTGCCAGCACATCACATGAGCTGGGTGTCAGATTTAACCCAAAATGTCATATCAACAGTACTGTTGCTCTCAGAAGAGCTCATCGAAGAGCTTAATCCAGTCGTGGAATTTGTCTCT

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0048514 blood vessel morphogenesis biological_process
GO:0019827 stem cell population maintenance biological_process
GO:0021591 ventricular system development biological_process
GO:0014033 neural crest cell differentiation biological_process
GO:0007420 brain development biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0070847 core mediator complex cellular_component
GO:0005634 nucleus cellular_component
GO:0016592 mediator complex cellular_component
GO:0003712 transcription coregulator activity molecular_function

KEGG:

id description
ko04919 Thyroid hormone signaling pathway
ko03021 Transcription machinery

ZFIN:

id description
ZDB-GENE-070912-193 No description available

Ensembl:

ensembl_id ENSDART00000135870

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073382 lncRNA upstream 6222 34416401 ~ 34419553 (+) False XLOC_037290
TCONS_00075165 lncRNA upstream 34622 34390451 ~ 34391153 (+) True XLOC_037289
TCONS_00074930 lncRNA upstream 47972 34375528 ~ 34377803 (+) True XLOC_037287
TCONS_00074929 lncRNA upstream 49365 34373486 ~ 34376410 (+) False XLOC_037287
TCONS_00074928 lncRNA upstream 51343 34373475 ~ 34374432 (+) False XLOC_037287
TCONS_00073391 lncRNA downstream 393729 34822849 ~ 34828098 (+) False XLOC_037294
TCONS_00073392 lncRNA downstream 397545 34826665 ~ 34828098 (+) True XLOC_037294
TCONS_00073393 lncRNA downstream 521822 34950942 ~ 34959774 (+) False XLOC_037295
TCONS_00075166 lncRNA downstream 541723 34970843 ~ 34973324 (+) True XLOC_037297
TCONS_00073399 lncRNA downstream 576971 35006091 ~ 35010396 (+) True XLOC_037298
TCONS_00073381 mRNA upstream 1776 34397843 ~ 34423999 (+) False XLOC_037290
TCONS_00073378 mRNA upstream 35900 34380299 ~ 34389875 (+) True XLOC_037288
TCONS_00073377 mRNA upstream 47101 34350025 ~ 34378674 (+) True XLOC_037286
TCONS_00073376 mRNA upstream 76124 34334156 ~ 34349651 (+) False XLOC_037286
TCONS_00073375 mRNA upstream 83512 34331368 ~ 34342263 (+) False XLOC_037286
TCONS_00073387 mRNA downstream 3933 34433053 ~ 34482698 (+) False XLOC_037291
TCONS_00073388 mRNA downstream 5823 34434943 ~ 34477553 (+) True XLOC_037291
TCONS_00073389 mRNA downstream 212117 34641237 ~ 34647695 (+) True XLOC_037292
TCONS_00073394 mRNA downstream 521822 34950942 ~ 34968429 (+) False XLOC_037295
TCONS_00073395 mRNA downstream 523083 34952203 ~ 34962725 (+) False XLOC_037295
TCONS_00073362 other upstream 589305 33810446 ~ 33836470 (+) True XLOC_037278
TCONS_00073351 other upstream 1180020 33244198 ~ 33245755 (+) True XLOC_037270
TCONS_00073341 other upstream 1244423 33180682 ~ 33181352 (+) True XLOC_037264
TCONS_00073333 other upstream 1343594 33074680 ~ 33082181 (+) True XLOC_037261
TCONS_00073322 other upstream 1773703 32649076 ~ 32652072 (+) False XLOC_037255
TCONS_00073390 other downstream 361630 34790750 ~ 34790887 (+) True XLOC_037293
TCONS_00073397 other downstream 540330 34969450 ~ 34969567 (+) True XLOC_037296
TCONS_00073405 other downstream 588727 35017847 ~ 35022314 (+) False XLOC_037299
TCONS_00073409 other downstream 1000082 35429202 ~ 35429316 (+) True XLOC_037302
TCONS_00073415 other downstream 1432964 35862084 ~ 35863842 (+) True XLOC_037304

Expression Profile

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