RNA id: TCONS_00073393


Basic Information

Item Value
RNA id TCONS_00073393
length 668
lncRNA type retained_intron
GC content 0.44
exon number 5
gene id XLOC_037295
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 34950942 ~ 34968429 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTTTTACAGACCTAGAGAGGGAGCAGGTTCTACTGTGCGCTCCTATTCATTCTACGCTAGACAGTTGAAGGCGGATGCAACCGACCtgacgTTTTGTTGTGGAAATTTGGCTCAGGTTTTTAAGCTAGACCAAGCATCAATTCCTCAGCCCCAGGGATCATGGCCAAAGATGCTGGTCTGATTGAGGCCAATGGGGAGTTGAAGGTTTTCATTGATCAAAACTTGAGCCCTGGCAAAGGTGTGCTGTCTTTAGTAACGGTGCATCCACAGGCTTTGACTGTTGGAAAACAGCTGTTGCCAAAAACACTGGGCCCTTCCAACGTGAACATTGCACCACATATGGTTATTAGCACACCTCAGAGGCCCAGCGGCTCCAATGTGATCCTCATGAACAGCCCACACACACCAAGCTCTCAGTTTATTACCCAGAGTCAACCGTCAGAAGCCTCTCCTTGGTCTTCAGGGTAAGTCATTCCTCAGCTGGTTATTATATAACCTTTTGTGGAGCCAGGTGTTTTACTGAATGTTTCGGATTTTCCTGTTGTCGCTCTGCGTTTGAATACTGCTGGAGAAATCCGTAACATTAATgatgatttttatatattatattttcatttcacTTTGCATTTGATACCATAAATGTGACCCTGTACTACAAAACTTACAA

Function

GO:

id name namespace
GO:0006325 chromatin organization biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0043412 macromolecule modification biological_process
GO:0006473 protein acetylation biological_process
GO:0051276 chromosome organization biological_process
GO:0044665 MLL1/2 complex cellular_component
GO:0034708 methyltransferase complex cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044451 obsolete nucleoplasm part cellular_component
GO:0071339 MLL1 complex cellular_component
GO:0035097 histone methyltransferase complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0005635 nuclear envelope cellular_component
GO:0005643 nuclear pore cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2883 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to contribute to RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of cell cycle and regulation of transcription, DNA-templated. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Orthologous to several human genes including TFDP1 (transcription factor Dp-1).

Ensembl:

ensembl_id ENSDART00000140851

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073391 lncRNA upstream 122844 34822849 ~ 34828098 (+) False XLOC_037294
TCONS_00073392 lncRNA upstream 122844 34826665 ~ 34828098 (+) True XLOC_037294
TCONS_00073382 lncRNA upstream 531389 34416401 ~ 34419553 (+) False XLOC_037290
TCONS_00075165 lncRNA upstream 559789 34390451 ~ 34391153 (+) True XLOC_037289
TCONS_00074930 lncRNA upstream 573139 34375528 ~ 34377803 (+) True XLOC_037287
TCONS_00075166 lncRNA downstream 11069 34970843 ~ 34973324 (+) True XLOC_037297
TCONS_00073399 lncRNA downstream 46317 35006091 ~ 35010396 (+) True XLOC_037298
TCONS_00073406 lncRNA downstream 66530 35026304 ~ 35030107 (+) True XLOC_037299
TCONS_00075167 lncRNA downstream 117776 35077550 ~ 35081996 (+) False XLOC_037300
TCONS_00073408 lncRNA downstream 119796 35079570 ~ 35081230 (+) True XLOC_037300
TCONS_00073389 mRNA upstream 303247 34641237 ~ 34647695 (+) True XLOC_037292
TCONS_00073387 mRNA upstream 468244 34433053 ~ 34482698 (+) False XLOC_037291
TCONS_00073388 mRNA upstream 473389 34434943 ~ 34477553 (+) True XLOC_037291
TCONS_00073384 mRNA upstream 521367 34425736 ~ 34429575 (+) False XLOC_037290
TCONS_00073381 mRNA upstream 526943 34397843 ~ 34423999 (+) False XLOC_037290
TCONS_00073398 mRNA downstream 36471 34996245 ~ 35009747 (+) False XLOC_037298
TCONS_00073400 mRNA downstream 54739 35014513 ~ 35025517 (+) False XLOC_037299
TCONS_00073401 mRNA downstream 54954 35014728 ~ 35025517 (+) False XLOC_037299
TCONS_00073402 mRNA downstream 55973 35015747 ~ 35018193 (+) False XLOC_037299
TCONS_00073403 mRNA downstream 56427 35016201 ~ 35025117 (+) False XLOC_037299
TCONS_00073390 other upstream 160055 34790750 ~ 34790887 (+) True XLOC_037293
TCONS_00073386 other upstream 521722 34426291 ~ 34429220 (+) True XLOC_037290
TCONS_00073385 other upstream 521822 34425775 ~ 34429120 (+) False XLOC_037290
TCONS_00073383 other upstream 521830 34425728 ~ 34429112 (+) False XLOC_037290
TCONS_00073362 other upstream 1114472 33810446 ~ 33836470 (+) True XLOC_037278
TCONS_00073397 other downstream 9676 34969450 ~ 34969567 (+) True XLOC_037296
TCONS_00073405 other downstream 58073 35017847 ~ 35022314 (+) False XLOC_037299
TCONS_00073409 other downstream 469428 35429202 ~ 35429316 (+) True XLOC_037302
TCONS_00073415 other downstream 902310 35862084 ~ 35863842 (+) True XLOC_037304
TCONS_00073420 other downstream 1834610 36794384 ~ 36795322 (+) False XLOC_037311

Expression Profile

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