RNA id: TCONS_00073633


Basic Information

Item Value
RNA id TCONS_00073633
length 4784
RNA type mRNA
GC content 0.44
exon number 17
gene id XLOC_037432
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 48943471 ~ 49052004 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTGCATATTCATACCTCTACTGAATATTCACGAGCACGCCTGTGGAGACGTCATCGCGCCCGAATGAGTATGCATGAGCTCAGCCCTAGCTGTAGTAGGATTCGCGATGTGTCTCTCCGGATGTGTTCGTCGCAGGCGGTAGTGAATGTGATCCAGCAGCGGAGCGACCCTCACGGCAGACCCATGGCGGAGCACAGCGACTCCCCGGCGGCCCTCCAGTCCCCGCAACCCGCGCCCACCACCGGCTGGCCCATCGTCAAGGAGGCGTACGAGCTCCAGGAGGTGATCGGCAGTGGAGCCACAGCAGTCGTCCAGGCAGCTCTTTGTAGCCCCCGACAGGAGCGAGTGGCCATCAAGAGAATCAACCTGGAGAAATGCCAGACCAGCATGGATGAGCTGCTGAAAGAGATTCAAGCCATGAGCCAGTGTAGCCATCCAAACGTGGTCACCTACTACACTTCATTCGTTGTCAAGGATGAGCTCTGGCTGGTCATGAAGCTCCTGAGTGGAGGATCAGTGTTAGACATCATAAAGCACACGTTCAACAAAGGAGAGCATAGAAACGGCGTTCTAGATGAATCCACGATAGCAAGCATTTTGAAGGAAGTACTGGAGGGGTTAGATTATCTACACAAAAACGGGCAGATTCACAGGGACGTGAAGGCTGGTAATATTCTTCTGGGAGAAGATGGATCGGTGCAGATCGCAGATTTTGGCGTGAGTGCTTTTTTATCCACCGGTGGAGACGTCACAAGACACAAAGTGAGGAAGACGTTTGTTGGGACCCCGTGCTGGATGGCCCCAGAAGTAATGGAGCAGGTACGAGGTTATGACTTCAAAGCTGACATTTGGAGTTTTGGAATCACTGCCATTGAACTCGCAACAGGCTCTGCGCCGTACCATCGATATCCTCCTATGAAGGTTTTAATGCTCACGCTGCAGAACGATCCTCCCTCGCTGGAAACTGGGGTCGAGGACAAAGAGATGCTTAAGAAGTATGGGAAATCTTTTAGAAAACTTATATCCCTGTGCCTTCAGAAGGACCCCGCAAAGAGGCCCACTGCAGCCGAGcttttgaaatgtaaatttttcCAAAAGGCTAAGAATCGAGAGTACTTGATGGAAAAGCTGCTTACTAAAGGACCAAATATAAGCCAAAGAGCCAAAAAGGTCAGAAGGGTCCCAGGGTCGAGTGGACACCTGCACAAAACTGAAGACGGAGACTGGGAATGGAGCGACGACGAAATGGATGAAAGAAGTGAAGAGGGGAAGGCAGCTGTCAATCATGAAAGGTCACGCAGGGTCAAAGAAAACGAAAACCAGCACGGAGAAGTGAATGCGAACAGTCTCCCGCTGGAGGATCTGTCCATTCAGCACCCGCAGGTTCAGCCATTGGAGAAACCCTCGAGCGCCCATGGAGCTGTGAACATGGTGCTGAGGTTAAGGAACTCCAAAAAGGAGCTGAATGACATACGGTTTGAGTTCACTCCAGGTCAAGACACTGCTGATGGAGTTTCTCAGGAGCTCTTCTCTGCTGGTCTGGTCAATGGTCATGATGTTGTAGTGGTGGCTGCTAACCTTCAGAAGATTGTAGAAGACCCAGTTACCTACAAAGTGTTGACCTTTAAGCTGGTGAGTTTATTCAGATGCTGAGTGTCATTGAGAGGTTTttgaagggtcacgaaacaccaaaacacactttttttgagctgttgacagtcatgtaTTTGCCCGACAGTGCTAAAatactattaggacacatatattacacaaaaaaagtgaaaattggttgtttttgctttatttcgagcaaattcgttcttccggtttgagaCTAATTTTTGAAGCAGCGTCACGCCGATTAGGTATttgcatgtattccagcgtgtagactggatgtctgtaccttgGAGTACTTTGTGATGTCTCTGTGTGTGCTGCATTTATTCATGAggaagacttggttcaaaccaatcagtgcctTCAATTGTGCATgcatgcaacttcattaatatgcatgatagcttcgaagactgtttttacctgtacagtgttcagacggcagagagacgccacgttgtgttgccaaaacaagtgggagaagAAAATTTGTTTGGAGATATGAGTCGtcagtgttgtttttattatttgctgcAAGTAaggttttagttttcattttcccgctatgagaggGCAGCTGGACTCTTGTGTGGATTGCAGTGGACGCGACGCTTGACAAAAATACATGTCTGAGGaacatttttacccgagagcttttcacatctggaaatggtgaaatctggatttgcagctctccttttaaaaaaagatgcagtTCTCGTTGGTGTTGATAGTCctatctctacagatttggtaagtaagcgatcagtgtctttgtttgtttattcagaggcaaagttagtttgtatcgtcagcagtactctttcagtgtttaagtgtttgaccttagtcaaatgatttctaagttactaaaatttacagtacgttaatatcactacaatattatgtgACTAaaagatccactgtaaatgctgctcttcgagtgtaaacatgtaaaccgCAATTAAAACTATTACCGCCATATAGGACTTTCGCCTCATTTTTTGACTGGAATAACACACACTGCTTTCTGGCGCTACGTTATCTACCGAGTGCATTTATGTTACaaagaaatgcggagggttttttttctctcatttgccatgcgttatcaaacattgcattaaaaatacacgcttaaagcagttcctcgaatcaaatatcttatCATGAGGGGCATAAAttaaattcctgaatgaaagagccaaactgcagttaaagtccaccatttaataatttgtcaaataatttgattactgatgtccatgtaaacacagtcactgtctttctgccctacgtctgtgtgttgttttgtctctgtgaaaatcagtgcgTGCCCAAACAGAAACTCCTATTTTTATGCAGATTTTTATGCACCTTTTctctttccctcctccgacactcccccctaaacagagctggacacacccacctttagaggtgtgaacctatattggtctcacggttcggttcggttaccattatcatgccatcgattcggttcaattcgatatctcgtgcatcatggtgcattgacgatgctttccatatacagtgttatattttacgggggaggctataacatgctgtctgtataaacacacagacacacagcaccacactgtctctcattcaaacacattcacaaacacagacagcatcaaacaaacaaaaacacgcacgcatgcacacacacacacacacacacacacacacttaagcccttgcaacagggagagctcgcgctgagcggagcagaaaaacgaaaaaaaaaaaaacgaaaaaaataagcacttttcctacggtcccttactgagagttACTCTCAccgcgagctctgccggctaaagtaaacgcagactgcgagggcttaaacggagcgtatggtcgtaatgtcgagcggaaaaaaaagaaagacagctgtgaaacataaccagctttgtctttttgtaggaaacacactttagatatttttagggtaagaggtttttgagttattgccgtctgtaactgaatgtgtgtcaggaatatcgaaaacaaaaccaactgaagcacgcttatttctggcgccccactggatatacagcacccttagcatttgcctatggtgcctatgccacaggccggccctgagttggctgagtgttgtaaataccggcgctcacctcccttgCGACAGAGAACAtcggagataaatgacgtcagtacataataacatcgcggtgcacagaagaaacaattaattttgacatccCTACCCCCCTTCCTGACTTTTACCAAAccagaggtgtgaaaacaccctgctgaagcAGGAAATATTGTGTACTGAAGACGATAGTGAAAtgtaaactacactgtaaaaatatctgtaaattagctgttttttgtattttgtggttcatgtttttatttttccacttttatttctgcttttgaattgcattatgggaccttgatattTCTTACAACatacttttaaccttgaaatgctaaaaaagagatttttatttaacacttttaatagtttaaaataacatattatctgggttggtgttgtgtaTTATGCTTCAAAAGCCTTGTTATAAACTGCCTTGTAATAAacatgtttattcagcaataatacTCCAGTACCGATAGCAGAACCGTTAACACCAGAGTACAGAGTTTTGGTACCCATCActaattataagtagactgttaggttggggtcagtgtaagctgacatgtacttgcaaagttaaaaaaaaatagcataataCGCGGTTATTacaggtaatccataatagacacagtaaagaaaactcgcacctcaggcacgctcgtgtctggaaCCACAAGTAtcactgtaacagccgagaggagaggaaaagttacctcacaaacagtcCAATGGGTCAAATGTCTAAagtgtgtgcgagagagagaggCAGGGATGCATTTTTATAGCATTTCTCCCTcgtagtgaaatagcggctctTGTGCCGTGCCTTCTTCAGTGTCAACGAAAGACTTTCCAGTAAACTCACAAGCACTTGAATtgtgcataattatctacctttAAAGTAGTCGGAGTGTTTCATTTACTCGCCCTTGCCTCCTTTGTCATAGTATACTACTGCGACATGgcacataggagataaatgacgtcagtacataataaccg

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
ko01001 Protein kinases

ZFIN:

id description
ZDB-GENE-140106-194 Predicted to enable ATP binding activity; protein serine kinase activity; and protein threonine kinase activity. Predicted to act upstream of or within protein phosphorylation. Orthologous to human STK39 (serine/threonine kinase 39).

Ensembl:

ensembl_id ENSDART00000125090

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075212 lncRNA upstream 66122 48869896 ~ 48877349 (+) True XLOC_037431
TCONS_00073632 lncRNA upstream 85068 48845578 ~ 48858403 (+) True XLOC_037430
TCONS_00075208 lncRNA upstream 187632 48707575 ~ 48755839 (+) False XLOC_037428
TCONS_00075213 lncRNA downstream 697332 49749336 ~ 49754453 (+) True XLOC_037434
TCONS_00075214 lncRNA downstream 817448 49869452 ~ 49885824 (+) False XLOC_037436
TCONS_00073639 lncRNA downstream 817688 49869692 ~ 49871467 (+) False XLOC_037436
TCONS_00073641 lncRNA downstream 818389 49870393 ~ 49871467 (+) False XLOC_037436
TCONS_00073640 lncRNA downstream 818389 49870393 ~ 49871467 (+) True XLOC_037436
TCONS_00073631 mRNA upstream 107977 48821631 ~ 48835494 (+) True XLOC_037429
TCONS_00073630 mRNA upstream 112053 48819280 ~ 48831418 (+) False XLOC_037429
TCONS_00073629 mRNA upstream 126352 48761455 ~ 48817119 (+) True XLOC_037428
TCONS_00073628 mRNA upstream 127440 48755638 ~ 48816031 (+) False XLOC_037428
TCONS_00073624 mRNA upstream 271217 48455909 ~ 48672254 (+) True XLOC_037426
TCONS_00073634 mRNA downstream 607110 49659114 ~ 49745424 (+) False XLOC_037433
TCONS_00073636 mRNA downstream 660864 49712868 ~ 49745424 (+) False XLOC_037433
TCONS_00073635 mRNA downstream 660864 49712868 ~ 49745424 (+) False XLOC_037433
TCONS_00073637 mRNA downstream 675607 49727611 ~ 49745424 (+) True XLOC_037433
TCONS_00073642 mRNA downstream 948500 50000504 ~ 50007673 (+) False XLOC_037438
TCONS_00073602 other upstream 2512338 46421027 ~ 46431133 (+) False XLOC_037412
TCONS_00073600 other upstream 3121886 45821469 ~ 45821585 (+) True XLOC_037408
TCONS_00073592 other upstream 3402878 45540477 ~ 45540593 (+) True XLOC_037402
TCONS_00073589 other upstream 3609366 45227101 ~ 45334105 (+) False XLOC_037402
TCONS_00073586 other upstream 3879202 45064155 ~ 45064269 (+) True XLOC_037400
TCONS_00073638 other downstream 733316 49785320 ~ 49785437 (+) True XLOC_037435
TCONS_00073648 other downstream 1036996 50089000 ~ 50090257 (+) True XLOC_037440
TCONS_00073655 other downstream 1748353 50800357 ~ 50800473 (+) True XLOC_037446
TCONS_00073665 other downstream 3030307 52082311 ~ 52082437 (+) True XLOC_037460
TCONS_00073706 other downstream 6196196 55248200 ~ 55248314 (+) True XLOC_037493

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU364449 True 936 TUCP 0.52 8 CI01000107 83181 ~ 102841 (-)