Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00073864 |
| length | 1930 |
| RNA type | mRNA |
| GC content | 0.48 |
| exon number | 4 |
| gene id | XLOC_037610 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007120.7 |
| NCBI id | CM002893.2 |
| chromosome length | 56459846 |
| location | 6118362 ~ 6208067 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0007186 | G protein-coupled receptor signaling pathway | biological_process |
| GO:0050896 | response to stimulus | biological_process |
| GO:0007601 | visual perception | biological_process |
| GO:0007602 | phototransduction | biological_process |
| GO:0018298 | protein-chromophore linkage | biological_process |
| GO:0071482 | cellular response to light stimulus | biological_process |
| GO:0007165 | signal transduction | biological_process |
| GO:0001750 | photoreceptor outer segment | cellular_component |
| GO:0005887 | integral component of plasma membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0009881 | photoreceptor activity | molecular_function |
| GO:0004930 | G protein-coupled receptor activity | molecular_function |
| GO:0008020 | G protein-coupled photoreceptor activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-110411-43 | Enables photoreceptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway; cellular response to light stimulus; and phototransduction. Predicted to act upstream of or within protein-chromophore linkage; signal transduction; and visual perception. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in photoreceptor outer segment. Predicted to be integral component of plasma membrane. Is expressed in several structures, including brain; eye; gut; heart; and testis. |
| ensembl_id | ENSDART00000032368 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00075290 | lncRNA | downstream | 1072373 | 5044975 ~ 5045989 (-) | True | XLOC_037603 |
| TCONS_00073852 | lncRNA | downstream | 1074274 | 5043087 ~ 5044088 (-) | False | XLOC_037603 |
| TCONS_00075289 | lncRNA | downstream | 1250923 | 4866100 ~ 4867439 (-) | True | XLOC_037602 |
| TCONS_00075288 | lncRNA | downstream | 1576541 | 4539475 ~ 4541821 (-) | False | XLOC_037600 |
| TCONS_00073839 | lncRNA | downstream | 2166536 | 3931723 ~ 3951826 (-) | True | XLOC_037596 |
| TCONS_00073869 | lncRNA | upstream | 206717 | 6414784 ~ 6502093 (-) | True | XLOC_037612 |
| TCONS_00074961 | lncRNA | upstream | 323482 | 6531549 ~ 6548796 (-) | True | XLOC_037614 |
| TCONS_00073887 | lncRNA | upstream | 1149752 | 7357819 ~ 7359484 (-) | True | XLOC_037626 |
| TCONS_00075291 | lncRNA | upstream | 1291193 | 7499260 ~ 7505531 (-) | True | XLOC_037631 |
| TCONS_00075292 | lncRNA | upstream | 1733702 | 7941769 ~ 7942597 (-) | True | XLOC_037636 |
| TCONS_00073862 | mRNA | downstream | 201607 | 5893608 ~ 5916755 (-) | False | XLOC_037609 |
| TCONS_00073863 | mRNA | downstream | 201669 | 5898659 ~ 5916693 (-) | True | XLOC_037609 |
| TCONS_00073861 | mRNA | downstream | 313133 | 5776359 ~ 5805229 (-) | True | XLOC_037608 |
| TCONS_00073860 | mRNA | downstream | 313317 | 5776359 ~ 5805045 (-) | False | XLOC_037608 |
| TCONS_00073859 | mRNA | downstream | 315346 | 5776359 ~ 5803016 (-) | False | XLOC_037608 |
| TCONS_00073865 | mRNA | upstream | 163852 | 6371919 ~ 6372535 (-) | False | XLOC_037611 |
| TCONS_00073866 | mRNA | upstream | 163859 | 6371926 ~ 6380653 (-) | True | XLOC_037611 |
| TCONS_00073867 | mRNA | upstream | 185301 | 6393368 ~ 6502491 (-) | False | XLOC_037612 |
| TCONS_00073870 | mRNA | upstream | 399447 | 6607514 ~ 6618067 (-) | True | XLOC_037615 |
| TCONS_00073871 | mRNA | upstream | 415469 | 6623536 ~ 6624663 (-) | True | XLOC_037616 |
| TCONS_00073841 | other | downstream | 1671258 | 4443918 ~ 4447104 (-) | True | XLOC_037598 |
| TCONS_00073830 | other | downstream | 2598651 | 3508318 ~ 3519711 (-) | True | XLOC_037592 |
| TCONS_00073827 | other | downstream | 2621783 | 3490831 ~ 3496579 (-) | True | XLOC_037591 |
| TCONS_00073809 | other | downstream | 3781059 | 2330861 ~ 2337303 (-) | True | XLOC_037575 |
| TCONS_00073808 | other | downstream | 3840870 | 2226463 ~ 2277492 (-) | False | XLOC_037574 |
| TCONS_00073868 | other | upstream | 201090 | 6409157 ~ 6409271 (-) | True | XLOC_037613 |
| TCONS_00073875 | other | upstream | 509610 | 6717677 ~ 6717801 (-) | True | XLOC_037618 |
| TCONS_00073897 | other | upstream | 1314368 | 7522435 ~ 7539023 (-) | True | XLOC_037632 |
| TCONS_00073901 | other | upstream | 1433693 | 7641760 ~ 7655301 (-) | True | XLOC_037633 |
| TCONS_00073935 | other | upstream | 3535492 | 9743559 ~ 9805319 (-) | False | XLOC_037657 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01000037_02527352_02576225.mRNA | True | 3298 | mRNA | 0.46 | 7 | CI01000037 | 2526102 ~ 2576704 (+) |
| bowfin (Amia calva) | AMCG00014352 | True | 1095 | mRNA | 0.53 | 4 | CM030128.1 | 10229000 ~ 10242261 (+) |
