RNA id: TCONS_00073865


Basic Information

Item Value
RNA id TCONS_00073865
length 617
RNA type mRNA
GC content 0.38
exon number 1
gene id XLOC_037611
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 6371919 ~ 6380653 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGACTGGAGACGGATCTGGCGTACTGGATGGATCAGCACCGCTCCAGTGATCAGGGTCGCCAGCATCACTATGATGAAAACGCTGCCCTGGGGCCTCGGGGAGCTGCTTCATACAGACACGGGGCAAATGTCAACTATGACTACTACTAGAACAGTCCATTCAACCAGAAACACGTCACCGATGCCAACAAGATGATTCTCTGCTCTGATTTACTGCACAGTGATCTCAgctctcttctttctttctttctttctttcttcctctaTAGTTTGTGCTTCCTTTTGTAAATGGAAATAAGAGGAGAACATGTATTTTTAGTGGAACAGTAAAGGATTCACATCttcatcatttacttaataaaaaaaaaattgcaattccTGGAAAGAAAAGTGTAATAACCGTGACTCATTCATACCTTTGTGTGATGAAAAGCATGACATTATCAGTCATTACAGGAAATCTTGTTCTCCGCTATAGATTTAAGAGCTCTCAGCTTTGGTATTCATAGACTTTCTTTATGTTGAAAGAATGGCAGGATAAAATAATTTTACTACCTTGTTCTGTAACTTTAAGTTTATATACGCTTAATTTTCTTGTAATAAAGGTGTTAAAAAAA

Function

GO:

id name namespace
GO:0042127 regulation of cell population proliferation biological_process
GO:0009611 response to wounding biological_process
GO:0070314 G1 to G0 transition biological_process
GO:0090398 cellular senescence biological_process
GO:0008285 negative regulation of cell population proliferation biological_process
GO:0031145 anaphase-promoting complex-dependent catabolic process biological_process
GO:0007417 central nervous system development biological_process
GO:0005576 extracellular region cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005615 extracellular space cellular_component
GO:0016020 membrane cellular_component
GO:0016324 apical plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-189 Acts upstream of or within central nervous system development and regulation of cell population proliferation. Predicted to be located in apical plasma membrane and cytoplasm. Predicted to be active in extracellular space. Is expressed in epidermis; pectoral fin; and pharyngeal arch. Orthologous to human ECRG4 (ECRG4 augurin precursor).

Ensembl:

ensembl_id ENSDART00000149189

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075290 lncRNA downstream 1325930 5044975 ~ 5045989 (-) True XLOC_037603
TCONS_00073852 lncRNA downstream 1327831 5043087 ~ 5044088 (-) False XLOC_037603
TCONS_00075289 lncRNA downstream 1504480 4866100 ~ 4867439 (-) True XLOC_037602
TCONS_00075288 lncRNA downstream 1830098 4539475 ~ 4541821 (-) False XLOC_037600
TCONS_00073839 lncRNA downstream 2420093 3931723 ~ 3951826 (-) True XLOC_037596
TCONS_00073869 lncRNA upstream 42249 6414784 ~ 6502093 (-) True XLOC_037612
TCONS_00074961 lncRNA upstream 159014 6531549 ~ 6548796 (-) True XLOC_037614
TCONS_00073887 lncRNA upstream 985284 7357819 ~ 7359484 (-) True XLOC_037626
TCONS_00075291 lncRNA upstream 1126725 7499260 ~ 7505531 (-) True XLOC_037631
TCONS_00075292 lncRNA upstream 1569234 7941769 ~ 7942597 (-) True XLOC_037636
TCONS_00073864 mRNA downstream 163852 6118362 ~ 6208067 (-) True XLOC_037610
TCONS_00073862 mRNA downstream 455164 5893608 ~ 5916755 (-) False XLOC_037609
TCONS_00073863 mRNA downstream 455226 5898659 ~ 5916693 (-) True XLOC_037609
TCONS_00073861 mRNA downstream 566690 5776359 ~ 5805229 (-) True XLOC_037608
TCONS_00073860 mRNA downstream 566874 5776359 ~ 5805045 (-) False XLOC_037608
TCONS_00073867 mRNA upstream 20833 6393368 ~ 6502491 (-) False XLOC_037612
TCONS_00073870 mRNA upstream 234979 6607514 ~ 6618067 (-) True XLOC_037615
TCONS_00073871 mRNA upstream 251001 6623536 ~ 6624663 (-) True XLOC_037616
TCONS_00073872 mRNA upstream 286059 6658594 ~ 6661665 (-) False XLOC_037617
TCONS_00073873 mRNA upstream 286164 6658699 ~ 6661657 (-) False XLOC_037617
TCONS_00073841 other downstream 1924815 4443918 ~ 4447104 (-) True XLOC_037598
TCONS_00073830 other downstream 2852208 3508318 ~ 3519711 (-) True XLOC_037592
TCONS_00073827 other downstream 2875340 3490831 ~ 3496579 (-) True XLOC_037591
TCONS_00073809 other downstream 4034616 2330861 ~ 2337303 (-) True XLOC_037575
TCONS_00073808 other downstream 4094427 2226463 ~ 2277492 (-) False XLOC_037574
TCONS_00073868 other upstream 36622 6409157 ~ 6409271 (-) True XLOC_037613
TCONS_00073875 other upstream 345142 6717677 ~ 6717801 (-) True XLOC_037618
TCONS_00073897 other upstream 1149900 7522435 ~ 7539023 (-) True XLOC_037632
TCONS_00073901 other upstream 1269225 7641760 ~ 7655301 (-) True XLOC_037633
TCONS_00073935 other upstream 3371024 9743559 ~ 9805319 (-) False XLOC_037657

Expression Profile

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