RNA id: TU62214


Basic Information

Item Value
RNA id TU62214
length 1336
lncRNA type sense_over
GC content 0.43
exon number 7
gene id LOC120559409
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 2205341 ~ 2232659 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttaggTATCAAGATTAACTATATAAAGAGAGAATATCTTCTTTTACTGAGTGAGAGTCATCAGCTTGTTGTTCCGTGTCAGCCAATCATCACCTCAGCAAAGATGGCATCAGGCTTTCCGTTTGCTTTGTTGCTCTGTTTGTCCATCGGACTGTTGGCTCCATCTTGTCGTGGACAAACCTCCTGCCCAGTCCCTGTCCTCCTGGTTGGACTCAGTTCGGCTCTCGctgtttcagtttcaacttCCAAGGAAAGAATTGGATCGATGCAGAGAACTTCTGCAAGGCCGCCGGTGGGAATCTGGCTTCAGTCCACTCAGAAGAGGAACACGTATTCCTCAAAACCTACATTAAGCAAGTGACCGGTGCAAACGGACGGGCCTGGATTGGAGGCTTTGACTCAGTGAAGAAGGGCGTGTGGATGTGGTCTGATGGATCCACAATTGACTACAAAAACTGGGATGTGGGGCAGCCTGACAACTTTGATGGAGAAGAGAACTGTCTTGAGATGAACTATCAGGGAAGGAACTGGAACGATGCGCCATGTGACCGTACTACAGTAATAATATTTCCTTTCCTGTGCGCCAAGAACCTGTGAGGCTTCCCGCCATCATGATCTCACTACAGCTCATCTATAATCTCTATCATTGATTCACTTTCAGTTTGTTCTGCAGACAGAAACAGCTctccgctgacagactcacttTCACTTGTTTATTTTCGGAAGAGTTAGGAAACAGTTCACATTTGAGTTTTAACGTTAGAAGGAAATTGACTCTCTGAGCTGGACAAAAACATAATCAGTTATTGGACTTTTAATCTAGTAAATAACACATAATGAAATACAGAAAAGATTCAAATACTCTGACATCTTTTCCATTTTAGTTTCCTGAATAGTGCCTgtcagctctgtccaaaggtaacaacatCCACCTACCAGACATGAGTGGTGAAGATCTTCTCTTCAAAAATGtccaaatagaaaataaaatccaaATGTTGTCTGAACGTTCTGTGATACAAGAGGAGTTTCTGGTGTGTTGggttctttctttttatttttttatttaacctttatttattcagggggagttcactgagaggcagcctctcttttgcaggaacgccctgatcacattcacacagttccacattcatacctggaagatgcccagtacaaccacagtctgatctgctggccactgagcagctccactggagccatgcacttcttcttcatctgtttTCCTTCACTTTATAATCAATAAgcattaaataataaaagacaTATTGTCACAGTGTCTGGTCCTGACTTATTGACTGTTGTTTTCTCTAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639276.1 lncRNA upstream 179142 2030045 ~ 2032073 (+) True LOC120559434
TU62171 lncRNA upstream 179248 2030587 ~ 2031967 (+) False LOC120559434
XR_005639270.1 lncRNA upstream 307837 1902564 ~ 1903378 (+) True LOC120559429
TU62131 lncRNA upstream 334233 1876712 ~ 1876982 (+) True G46383
XR_005639280.1 lncRNA upstream 360017 1849055 ~ 1851198 (+) True LOC120559438
TU62253 lncRNA downstream 20427 2253086 ~ 2253741 (+) True G46485
TU62256 lncRNA downstream 22678 2255337 ~ 2255857 (+) True G46488
TU62260 lncRNA downstream 29132 2261791 ~ 2262110 (+) True G46490
TU62262 lncRNA downstream 43606 2276265 ~ 2276586 (+) True G46492
XR_005639278.1 lncRNA downstream 49465 2282124 ~ 2288627 (+) True LOC120559436
XM_039799490.1 mRNA upstream 602770 1568295 ~ 1608445 (+) True LOC120558473
XM_039799642.1 mRNA upstream 1158205 1048972 ~ 1053010 (+) True adrm1
XM_039799637.1 mRNA upstream 1165976 1015388 ~ 1045239 (+) False LOC120558589
XM_039799636.1 mRNA upstream 1165976 1015389 ~ 1045239 (+) True LOC120558589
XM_039800005.1 mRNA upstream 1200378 984169 ~ 1010837 (+) False trim101
XM_039799519.1 mRNA downstream 104677 2337336 ~ 2339429 (+) True LOC120558501
XM_039801074.1 mRNA downstream 180912 2413571 ~ 2420858 (+) False LOC120559387
XM_039801073.1 mRNA downstream 180912 2413571 ~ 2420853 (+) True LOC120559387
XM_039799553.1 mRNA downstream 316280 2548939 ~ 2550724 (+) True LOC120558519
XM_039799556.1 mRNA downstream 413233 2645892 ~ 2647467 (+) True LOC120558523
TU62038 other upstream 573045 1635948 ~ 1638170 (+) True G46328
TU62008 other upstream 687984 1522685 ~ 1523231 (+) True G46305
TU61892 other upstream 926836 1277288 ~ 1284379 (+) True G46238
TU61894 other upstream 928476 1277288 ~ 1282739 (+) False G46238
TU61880 other upstream 965997 1236315 ~ 1245218 (+) True LOC120559832
TU62302 other downstream 157287 2389946 ~ 2390512 (+) True G46530
TU62381 other downstream 513239 2745898 ~ 2770453 (+) True G46574
XR_005639249.1 other downstream 1046702 3279361 ~ 3283170 (+) False LOC120559414
XR_005639245.1 other downstream 1272649 3505308 ~ 3512484 (+) False LOC120559404
TU63394 other downstream 3966387 6199046 ~ 6200594 (+) True G47444

Expression Profile