RNA id: TU62343


Basic Information

Item Value
RNA id TU62343
length 6351
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G46555
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 3041473 ~ 3253531 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGATAttagagatgatcattcatgctttcatttcttcaCGTTTAGATTACTGTAAGTCTTTTTACCTGTCTGAGTAAGAATCAGCTTTATCGTCTCCAGACCgttcagaactctgctgcaaggcttttaatgctgttgtggaagtttcttttgcagcaggagtaaagttttgaaagtttagtaaagtgaaacaaataagacagtcgaAACTAAATCAAGtaaggtttttgtattttattaagatacatttgcaaatataggaggaACACAGTTTCACAAAAGTACATCAGCTCAATGTGGAGTCAGttcctcaaatgagtgaacagaaacactaggcttatatgcatcttatatcatatatcatatgcgtgtgacagcacacacgcacttggctaTATTATGATGCTAGAATTCTTACacgcaatctgatacacatgaagacaatcaaagaaaaaacacaagagacatcttggagccatttcccctcctcctccctgtacgacttatACCCCCACAGTTACATCTCAACTGGCCTGGGAAAAACTGAATAGGCAGAGAAAGATAGTTTACTGTGGCgttgtacctttatcggttcaaACAAAGCCCATACGCATTCGTCTCCAAGTTAGTTAagcagaatcagaatcaacatGTGGGAAAGATAAAGTCTCTTTCAATATTGTGAGAAGATGCAAAgcacaaaagaaaaatgagaatacaaggaattatgcttaatgtaattttgccattacaATGCACATTAAAAGAGTACACATCATACCTGTTTTAGCAgcacttcactggttaccagtccagcatagaattcaatttaaaatcctggtcattactttcagagccTTGCAAGGTCAAGTTCCTTCATACATCTCTTCATactcattttaaaactagaggggatTGGTCATTCCAAGCAGTCACacctaggctgtggaatgacTTGCCTCTCTCGCTACGTTGTGTGGATTCTGtcgaatcttttaaaaagcagctggaGACTCTGCTGTTCAACCAGGCTTTTACTTAGTTGAGTGGGTTTTATGGTTGttcatgttttctgtttatatttcaatttgcttgtattgtgacttcttgtgttgtattgcattttatctgtgaaagatgctatacaaataaactttacttacttacttactccaCGCCActgaccagcagctgattggacgaatgcgtgaGGTGGGTCTGGCTACTCAAGAATTTCAACAGTGTCAAGGCGGCTCATTGAGAATACGATCTagtattttatgaaaatagttaaaacgtgtttctgaaaacattttaagcgagaaacaaaggtcagtttgaaagattttcgtctacttctactggatagtcgcgttcaacggattcatttgcataaagctgggcagCTTTTGTACTCCTAGACTCGTGCACAGCgtgtgcacactatgcttgttacacacacagggatgcacagcagcacacacacatgcagaagtttacaaataaaaatattacggtgcaaatccaccatcataatagcaatgctctaAGGTCCAAACGTGCCTGGCTGTTAAAgcgaatgggagatgacactctgattggttgattgcatgttacgcccaaaacacacctatgattaatgaagacactaaggacaaccctgtAGAACCATGCGCACGGTGcatggacccttttttccgccgtcaaactagcaaaagtggatttggccGTGCacttagatcattaaaatagggcccttgatGTTCCTGGGCTTTGAGAAGAACAGCTCTAATGGCCTCTAGTCTCAACTAGTACCCCCCCAAATATTTTTCTCATTGGATCTGCACAAATCACGTAGGTGAcccattttggtttcaaaacggctAATTTCACCGAAAGGTGAGGAGTTTGCAGGCCTGCCCACTGCTgttgggtctaacgttagcggtccactgacccactgctgctgcatCTGACGTTAGAGGGGTTTTGACATCAGAACTCCgggcaaatcttttgttacaaacactgcagctgaatcttttctctcctgtgtggagtGTCATGTGTGGCCGTAAACTTCCTCTTcatgtaaaagatttcttatactgagcagctgaaaggcttcTTTCCTGTGTGAGTTTTTATGAGTGACCGTAAATTTTCACTCCGTGTAAAAGATGTGTGTGGattctaatgtgtttttgtaaatgtccactctgtgtaaaagatttcttacaaactgagcagctaaaaggtttctctcctgtgtggattctcatgtgtaaCCGTAAATTTCTAGACATTAAAAACGTTTTCTTACAAACTaaacagctgaaaggtttttctcctgtgtgagttctcatgtgtttctTCAGGTTTCCACTATCAGAGAAAGCTctaccacactcagagcagctaaaaggtttctctcctgtgtggattctcatatGTCTCTTAAGATATGTCTTGAAGCCAAATattttcccacactcagagcagctgaatgttttcttacatgATGAATCGTGTTTCAGAGcatttaaagctgactgaggttctctggtctccttccaatcagcactgtcatcagtctcaggttcagaagagtctccagtctggtcttcagtctctggttgtaaaagtggatgtgagttcctggctggttctggtcctccacagtcctctccatcagcttctgtttccatctgACCAACACATGTATGTGTTTTGACATCAGAACGccaggcaaatcttttgttacaaacactgcagctgaatcttttctctcctgtgtggactgccATGTGTGATCGTAAACTTcttctctgtgtaaaagatttcttacaaattgagcagctgaaaggcttctctcctgtgtgagatTTTATGTGTGACCGTAAATTTTCACTCCGtgtaaaagatttattacaaactgagcagctgaaaggtttttctcctgtgtggattctcatgtgtttttGTAACTTTCCATTCAGTGAAAAATATttcctacagactgagcagctaaaatgcttctctcctgtgtggactctcatgtgtttctgtaaatatTCACTCCGTGAAAAAGATAtattacaaacactgcagctataaggcttttctcctgtgtggattctcatgtgtctcCGTAAATTTCTAGACATTAAAAACGTTTTCTTACAAACTaaacagctgaaaggtttttcgcctgtgtgagttctcaagTGTTTCTTCAGGTTTCCACTATCAGAGAAAGCTctaccacactcagagcagctaaaaggtttctctcctgtgtgagttctcatatGTCTCTTAAGATATGTCTTGAAgccaaatcttttcccacactcagagcagctgaatgttttcttacatgttgaatcatgtttcagagagtttaaagctgactgaggttctctggtctccttccaatcagcacggtcatcagtctcaggttcagaagagtctccagtctggtctttagtctctggttgtaaaagtggatgtggatgtgagttcctggctgatTCTGGTCCTCCATAGTcttctccatcagcttctgtccAGGGTTTCACAATCCAGTGGTGCGCACGTTcgcataaaagaggcggtgatTGCACAGCATGATcgatcgcaaacatctaccggagccacatattttacataagaagagcaaactataattctacataaatatgaagaacacagacacagttttacaggcaaaacgcaatacagtcgcggcttactaaaacaggaaggaaagctggcaaaaaaatagccgacgctgtaaatGCGTAAATTACAACGCTTATCATCaacccatcagtcaggcacaagatctgaccataattacacttatggtttccataaactgtcgttgctttagcctattatattatcagttgcaaccctggcagtgggaagcgatcacgagagcaaataaaaaatataaatacataattcaAGCCGATGTgtggcattggcaacacacggctcaacaaGCTGAAAAATAGTCTATACGTAAGagcgctgctctctctctccgcgcaccgagctccaccaGATCTTCTAAGaatggtgacgccgttatcaatcgagtattaactggtcagtaggcggagcttttacaccggttgatctctaatcccCAACATAAGTTATCACGGTGATTGAACCAGGTAACAAATGATCCACCATCGTGATACActaaaccctgggttgaacctgaagttaccacgttaacgccaaatcttgcttcgtagtacaggcctctggtatAGGTGAAAACAACGCTCTGGGtggtttgcatttctttgaaccaatcacaacggtcttgggcggcgctgagCTCCGGAGGcagcaacggtggctctgctaaatagtctcgggaaggaacttgttttggtggaacatttgcaccccgcaaaagaaaacgccacatccaatattatatgaagttaactgttacacaatacagtaacgtgaacTTATCTGTAAAATTACAAGAAACTAGTGATCTGCTTATAACTTAAAATGCTTTCAGATCAACTCTTCTCTGTGCTTGGACCTTAGCCAATGTTTTATCCTTATTCCAACTATTCTTACTAATTCACCTTCTACTTTTTACATTGAAGACAGCAATCCAGTTTAGTTAAATAtatgtacaaaataaaatatatacagttgTGGTAATGATAAGTGACTTCTGGGAATACAAAACATAACTGAGGTGAATAGATAATTAAATAATAGAGAAGCTGTATGGCCCTAATCACAGAACGTGCGTCCGTTAATCACGCGTCAAAAAATGTGTGCTATATAAAGAAATTTGCGATCTCAGATTAACTCACAAGTTGCAGCTCTGAAATACAGATTCATTGTTACACAGCTTGTTAAACTCTCATCACTCATCTGACAGAAAGTTGGAATCATCTTTCGGCTCCTTTGTGAATGTTACTGCGTGTGTTTGTTGCTGTCCTGTCCCTTACAGGAAGTTGATCCTTTTATATTCCCCAAAACATCTGGTCTTGGTCAGAAAAACCTGAACAGCTGTTCTTGTGGAGTTTCACGTGACACAATAACTTTTTACTCTCCGAATATCGGCTTCCGCAAAGTGTGCAGCCGAGCGGCTTGTCCTCCGTGTGAATGATCATGTGCACCTTCAGATTTGGCCTGTTGTTGAATCTTTTCCCACACTGAGAGCAGCTATATTTCATACCATCGACAGAGACAGACtagtcttcagtctctggttgtgaAAGTGTCTGTGGAtgtggttctggtcctccacagtcctctccatcagcttctgatTCCGTGTCTTCAGCTGCCTCTCTGTTCTCCTCAGTTTGACTCTGACGGCCGACACACTGAGGGTTCCTGAGCTGTTTGTACCAGGTGAAGCTTTGGTCACAAACGCTGCAGCAGAACAGAATCTTCTTTTTAACCGTGTAAGACTTAAGTGTCTTGCAGCCAAGtcttttcccacactcagagccCCTTAACAGTTTTTTCCATCGTACGACTTACCGGTACTATTtgtcagagagtttaaagctgacagaggttctctggtctccttcccaTCAGCACTGTCACCAGTCTCAGGAtcagtggatgtgagttcctggctggttctggtcctccacagtcctgtccatcagcttctgttttcatcggaccaacacatttatgtgttttgacatcagaacaccaggcaaatcttttgttacaaacactgcagctgaatcttttctcATGTGTGACCCTAAacttcctctctgtgtaaaagattttttacaaactgagcagctgaaagatttttctcctgtgtggattctcatgtgtttcttcAGATGTGACTtgaagctgaatgttttcttacttcttgaatcatgtttcagagagtttaaagctgactgaggttctctggtctccttccaatcagcactgtcatcagtctcaggttcagaagggtcttcagtctggtcttcagtctctggttgtaaaagtggatgtgagttcctgactggttctggtcctccacagtcctctccatcagcttctgtttccatgtgttgagtttgtctttgatgaagctgtgaggactgagctttctcttcatcatcttcactcttcacagtgacaggagtgaatgggaacttggtgatatcagcctcctccagcccttgaagctgctctccctcctgactgctccacagttcctcctgttcctctttaatgtgtggggggggctctggctcctcctggtccacactggagctacactcctgctgctcctcttcacCAACAATCATTTCCAGAATGTCTGGAGGTAAagct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639283.1 lncRNA upstream 69852 3018811 ~ 3035935 (+) True LOC120559441
XR_005639261.1 lncRNA upstream 128093 2976616 ~ 2977694 (+) True LOC120559422
XR_005639250.1 lncRNA upstream 130217 2974854 ~ 2975570 (+) True LOC120559417
XR_005639273.1 lncRNA upstream 226045 2879162 ~ 2879742 (+) True LOC120559432
XR_005639281.1 lncRNA upstream 249607 2855557 ~ 2856180 (+) True LOC120559439
TU62333 lncRNA downstream 35028 3165512 ~ 3288089 (+) False LOC120559392
TU62506 lncRNA downstream 317620 3448104 ~ 3514758 (+) False LOC120559404
TU62501 lncRNA downstream 373403 3503887 ~ 3513570 (+) False LOC120559404
XR_005639284.1 lncRNA downstream 530106 3660590 ~ 3661927 (+) True LOC120559445
XR_005639285.1 lncRNA downstream 576121 3706605 ~ 3719155 (+) True LOC120559446
XM_039799572.1 mRNA upstream 279075 2825257 ~ 2826712 (+) True LOC120558536
XM_039799557.1 mRNA upstream 348740 2753513 ~ 2757047 (+) True LOC120558526
XM_039801113.1 mRNA upstream 443445 2661572 ~ 2662342 (+) True LOC120559413
XM_039799556.1 mRNA upstream 458320 2645892 ~ 2647467 (+) True LOC120558523
XM_039799553.1 mRNA upstream 555063 2548939 ~ 2550724 (+) True LOC120558519
XM_039801086.1 mRNA downstream 15997 3146481 ~ 3166448 (+) True LOC120559392
XM_039801077.1 mRNA downstream 47813 3178297 ~ 3185180 (+) True LOC120559389
XM_039801078.1 mRNA downstream 47813 3178297 ~ 3185180 (+) False LOC120559389
XM_039801114.1 mRNA downstream 148880 3279364 ~ 3304637 (+) True LOC120559414
XM_039801104.1 mRNA downstream 369838 3500322 ~ 3513600 (+) False LOC120559404
TU62381 other upstream 335334 2745898 ~ 2770453 (+) True G46574
TU62302 other upstream 715275 2389946 ~ 2390512 (+) True G46530
TU62038 other upstream 1467617 1635948 ~ 1638170 (+) True G46328
TU62008 other upstream 1582556 1522685 ~ 1523231 (+) True G46305
TU61894 other upstream 1823048 1277288 ~ 1282739 (+) False G46238
XR_005639249.1 other downstream 148877 3279361 ~ 3283170 (+) False LOC120559414
XR_005639245.1 other downstream 374824 3505308 ~ 3512484 (+) False LOC120559404
TU63394 other downstream 3068562 6199046 ~ 6200594 (+) True G47444
TU63466 other downstream 3567527 6698011 ~ 6705887 (+) False ccm2l
TU63965 other downstream 4981957 8112441 ~ 8116228 (+) True G47903

Expression Profile