RNA id: TU62353


Basic Information

Item Value
RNA id TU62353
length 421
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G46558
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 2565724 ~ 2566315 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTTTGGAATAACCATACCATCAGGCCTGTCCGTCAGTCTCTCTGTCCATCTGGGAAACCGGAGACCATGTACCACCTGCCTCACAGGTTTGGTGGAAGGGATTGTGGATTCCCAGTGGATCCCCAAGTGTTACAGGAGTTCAAAGACCTTCTGCCACCCACGAACAGTTTGTGTGGAGATGCTAACCTCCAAGCATATTTTACCAACTTGGAGAGACAGAGCCAGCTCGCTCCACCCATAAACTGGCCAGCTGCTGTTGACAACTACATTAGACTTAAGGAAATGGCTGgtctttgagagagagagagagagagagagagagagagagacagacacacacagacagacacacacagacagacacacacagacagacacacacagacacacacacagacagacagacacacacagacagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62293 lncRNA upstream 218167 2344461 ~ 2347557 (+) True G46523
TU62289 lncRNA upstream 226366 2338651 ~ 2339358 (+) False LOC120558501
TU62281 lncRNA upstream 243695 2321337 ~ 2322029 (+) True G46511
TU62271 lncRNA upstream 263506 2301946 ~ 2302218 (+) True G46501
XR_005639278.1 lncRNA upstream 277097 2282124 ~ 2288627 (+) True LOC120559436
TU62369 lncRNA downstream 36883 2603198 ~ 2604255 (+) True G46564
XR_005639264.1 lncRNA downstream 71649 2637964 ~ 2645754 (+) False LOC120559425
XR_005639265.1 lncRNA downstream 71656 2637971 ~ 2645754 (+) False LOC120559425
TU62363 lncRNA downstream 71856 2638171 ~ 2640534 (+) True LOC120559425
TU62365 lncRNA downstream 71856 2638171 ~ 2638946 (+) False LOC120559425
XM_039799553.1 mRNA upstream 15000 2548939 ~ 2550724 (+) True LOC120558519
XM_039801074.1 mRNA upstream 144866 2413571 ~ 2420858 (+) False LOC120559387
XM_039801073.1 mRNA upstream 144871 2413571 ~ 2420853 (+) True LOC120559387
XM_039799519.1 mRNA upstream 226295 2337336 ~ 2339429 (+) True LOC120558501
XM_039801109.1 mRNA upstream 333102 2211176 ~ 2232622 (+) False LOC120559409
XM_039799556.1 mRNA downstream 79577 2645892 ~ 2647467 (+) True LOC120558523
XM_039801113.1 mRNA downstream 95257 2661572 ~ 2662342 (+) True LOC120559413
XM_039799557.1 mRNA downstream 187198 2753513 ~ 2757047 (+) True LOC120558526
XM_039799572.1 mRNA downstream 258942 2825257 ~ 2826712 (+) True LOC120558536
XM_039801086.1 mRNA downstream 580166 3146481 ~ 3166448 (+) True LOC120559392
TU62302 other upstream 175212 2389946 ~ 2390512 (+) True G46530
TU62038 other upstream 927554 1635948 ~ 1638170 (+) True G46328
TU62008 other upstream 1042493 1522685 ~ 1523231 (+) True G46305
TU61892 other upstream 1281345 1277288 ~ 1284379 (+) True G46238
TU61894 other upstream 1282985 1277288 ~ 1282739 (+) False G46238
TU62381 other downstream 179583 2745898 ~ 2770453 (+) True G46574
XR_005639249.1 other downstream 713046 3279361 ~ 3283170 (+) False LOC120559414
XR_005639245.1 other downstream 938993 3505308 ~ 3512484 (+) False LOC120559404
TU63394 other downstream 3632731 6199046 ~ 6200594 (+) True G47444
TU63466 other downstream 4131696 6698011 ~ 6705887 (+) False ccm2l

Expression Profile