RNA id: TU62506


Basic Information

Item Value
RNA id TU62506
length 1307
lncRNA type sense_over
GC content 0.35
exon number 2
gene id LOC120559404
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 3448104 ~ 3514758 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTCTTGTGCATTATCCTTGGCTGACTGGAATTTCAGCCCTGGCCAGACATGATTTCAGGTTAAACTTTTCCATATacctgctcattaatattcTAACCTTCTTCAATGTCTATctgttttcctctctctctctctctctctctctctctctctctctctctctctgtctctctcttactcactcacacacacacacacacacacatacctggtgtggaaataaaaaaaacaaaaaaaatcacactgatcataaaaaaatttaaagtaaaaaaaaagttatgttgAGTATGAAAACTCTTGTTCATTTCATTTTACTTCATAATTGCAACCGCATGTGTTGTATTCATTGTTGCAAAACTTGTTCTGTATATAGTTTGTTATCGTGATCAAAACCATTGATCTGAAGCTCAATGCTGATGCTGTCATGTAAATAGTTTTctaatctaaaaaataaaattaaaaattaaaatataacaatttctgATCAACCCATATCAATTGCATGCTTAAAATAACATACCCGCCCATTTTAAAGACAACCCAACCCACTTCCGGGTTAAATCCTGTCCACTTCCGGGTTAGGCCCCGCCCAGTCCGAGTACAGATATAGATAATTCATATGGttaacagatacagataatgctGTACTCGCTCATCCCTAGTGTTAATGTGCGTCTgtgccgccgccatcttgggacGAACAACTGATCTTAAAGACTCCTAGAAAAAAGATTTTTGTACTGCTTTTGGATGTTCATGTAAGAAATGCTAAACAAAGCAACATAGAATAACATTTCACGGATGAAAAAGATGTTTTACAATATTTAACGAAAGCGTTAAATTTAATATCACAAAAGGTAACATTAATCCTTCTTTTAAGTTAACAATAAGTTAAGTGACTGTCCTAATACTGAgttaagctaatgctagcttgtgtcAGATAAAGTATTTGTTATTTCAGTAATTAGTAATACCTCATTAAGATGCTGAAAATGAtgtttgttatgtgtgttaCTGAACAGTTTCTTTAATTGTGGATAGACCTTCTGCCtccatagacacacatgcattagGAGGAGCACAATGTTCGTTACGAAATGGCCGTTGTGTCAACATATCGCTCCAATAAACAGCAGCGACCAATGCGGTATCtacgtatacatatatattttatattccaCAGGCTTCTTCAGTGGATTACACACGTGAGAACAGCTGTTGAATTTCGTTGGAAGTTTGCgagcttttggctaattctAGCATTTTTAACCCATGTACAATTATTCCTTTTATTAATTTGCTCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62333 lncRNA upstream 160015 3165512 ~ 3288089 (+) False LOC120559392
TU62341 lncRNA upstream 194573 3105787 ~ 3253531 (+) False G46555
TU62343 lncRNA upstream 317620 3105787 ~ 3130484 (+) True G46555
TU62346 lncRNA upstream 338318 3041473 ~ 3109786 (+) False G46555
XR_005639283.1 lncRNA upstream 412169 3018811 ~ 3035935 (+) True LOC120559441
XR_005639284.1 lncRNA downstream 145832 3660590 ~ 3661927 (+) True LOC120559445
XR_005639285.1 lncRNA downstream 191847 3706605 ~ 3719155 (+) True LOC120559446
TU62875 lncRNA downstream 329039 3843797 ~ 3862562 (+) False gpr173
TU62873 lncRNA downstream 352393 3867151 ~ 3870238 (+) True G46996
TU62874 lncRNA downstream 355617 3870375 ~ 3872139 (+) True G46997
XM_039801114.1 mRNA upstream 143467 3279364 ~ 3304637 (+) True LOC120559414
XM_039801077.1 mRNA upstream 262924 3178297 ~ 3185180 (+) True LOC120559389
XM_039801078.1 mRNA upstream 262924 3178297 ~ 3185180 (+) False LOC120559389
XM_039801086.1 mRNA upstream 281656 3146481 ~ 3166448 (+) True LOC120559392
XM_039799572.1 mRNA upstream 621392 2825257 ~ 2826712 (+) True LOC120558536
XM_039801127.1 mRNA downstream 211203 3725961 ~ 3734391 (+) True LOC120559447
XM_039801128.1 mRNA downstream 211605 3726363 ~ 3734391 (+) False LOC120559447
XM_039801133.1 mRNA downstream 328306 3843064 ~ 3865798 (+) True gpr173
XM_039799378.1 mRNA downstream 443798 3958556 ~ 3982281 (+) True LOC120558400
XM_039799383.1 mRNA downstream 490507 4005265 ~ 4014601 (+) True LOC120558402
XR_005639249.1 other upstream 164934 3279361 ~ 3283170 (+) False LOC120559414
TU62381 other upstream 677651 2745898 ~ 2770453 (+) True G46574
TU62302 other upstream 1057592 2389946 ~ 2390512 (+) True G46530
TU62038 other upstream 1809934 1635948 ~ 1638170 (+) True G46328
TU62008 other upstream 1924873 1522685 ~ 1523231 (+) True G46305
TU63394 other downstream 2684288 6199046 ~ 6200594 (+) True G47444
TU63466 other downstream 3183253 6698011 ~ 6705887 (+) False ccm2l
TU63965 other downstream 4597683 8112441 ~ 8116228 (+) True G47903
TU64119 other downstream 4827993 8342751 ~ 8380392 (+) False pkig
TU64120 other downstream 4828160 8342918 ~ 8380578 (+) False pkig

Expression Profile