RNA id: XM_039801100.1


Basic Information

Item Value
RNA id XM_039801100.1
length 2216
RNA type mRNA
GC content 0.42
exon number 3
gene id LOC120559404
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 3448104 ~ 3514758 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTGGGTCAGAGTAGGAGAGAAACGGAGCGAATAGTGGACAGTAAGAATTTGTGGAGGATGGAGTTTAACAGTTTACAGCTAGCTTGGATTACCTGTGTGCGTAAATGATACAAAAaccacccacacacactcccacccaCAACTGTTAATTAAACTGGAGAAAGGGAAGTTCTGCTTCTTCTGTGTCTGATCAACACACCGTGGCGACGGCTACTACACCTGAACCACTTAGACTCATCTACAATCTGCTTCATTATACATttcatgttagcttctaggagtcatgttaTGTTACTGCTGATGAAGATTTGCCTGATTTTGCCGCTTCATAGCAAAAGCAGTTACATGACAAAATAACAGGGggcttttgttaaaaaaattttgTTAGGAACTATTATGCTTGTGTGTTAAACTGTTGCATGAAACTGTTATTCAACTTTATCTGTGCATATCAGATAAGGAAGGACTGAGTGATCTTGCAAGAACAGAAAGCGCCTGTGGGCGAAGCACATGATGTGTGGGAGATCATGGGAGAAGCGCAAGACTAACCCAGATAAGAATATGTGTTTGCTGCCTTTGTGTTTTATGTAACCATGGGTGTAACATGCTTTTAAAAATCAGCTGCTGAGGGTGATCGGCAGTCAATTTCTGTACTAATGAGGTGCATGTAATTGATTCCTTGTTGCAAGTAAACTAGCTTTGAAGAAGACTCCAGTGACTTTGTCAAGTCTTTGATAGTTATCCTAACAGCTTtcattgttgttgtgtgtgaatgtgaggaaaatgagaggagagagcagctcctGAAGATTTCTGCATGCTTTGATTTGTACAGAATCCAGAGTGAGTCCAGCAGCCACAGTGGAGATCTGCTGGATTTTAGGACAAGAGTggaatggaggaggacaacCAGAAGCCGGAGCAGCGGAGCAACAAGATCCCCAGAAGACGAGCAGCAGACTCGCACTCTGATACCAGCGATGGtcagaaacagagaggaggagtggGACCCAAATGTCACCACTGTCagcactgtgacaaatccttcacaacatcaaaatatttaaagattcatcagagagttcacactggacAGAATCTACACatctgtgatcaatgtggggcagctttcataCAACAGAGTAACCTAAAaaaacatcaacgcattcacactggagagaagccgtaccgttgtgatcaatgtggggccgCATTCACACTACAGAGTAACCTAAAAAGACATCAACtgattcacactggagagacgccgtacagctgtgatcaatgtgggaaaacttttaCTCAGAGTGGTAACCTGGAAATTCACcaacgtgttcacactggagagaagccttactggtgtgaacaatgtggggaaACATTTTCTGAGAGTAGTCACCTTAAaacacatcaacgcattcacactggagataaaccttacagctgtgatttATGTGGTAAAACCTTTTCTAGGAGAGGTAACCTAGAAAGCcaccgacgtgttcacactggagagaagccgtactggtgtgaacaatgtgggaaaacgttTTCTGAGAGTGGTAACCTTAAAAgacaccagcgcattcacactgttCACTTCACACTGTAGTGAACATGTTTcagagccaagctgtttcctcctgcctcctcctcatgccctgaTAGCTTTTATTCCTGTAATACAATATTTTGAGTTCAGGGTGCTATTTAACTAATGCTGCAACAAAGGAGTATTTGTTCTTAATTAAAATAGTCCCATCACTGTTTACTAAGGTAATGTCAAATAGTCTATTGTCCCTTAAGATGAAGAAAAGAAGCAAATCTTCATAACTGGGAAGCTTTATGGGAAGCTTTAATCAGAacatgtctgctgctgctgcttaaaaaatgacttgaacAGTTACTGTGTTAATTAGAGTTGAGACGGTTACTCGGCTGAAACGAGTATCCGGTATAGATAAAGCACTTTTGCCGAGTACGAGTATTATACTAGTAATACGAGTCAATATCTGTGCTCGGATTGAATAAAAATCCTCATTGGGTAGCTGACTGTGTCTGCGTTCTGTGATAGGCTAGTCACAGCGCCCCTcccctacacacatacagatttaTTGTGTTGCTCTTCATTAAAGTCGATGCAGATCTGAAAAACAGCGGACTATTTCATCCGTAGAACTCAGTCCCCccccatctctttttttttttctctctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62333 lncRNA upstream 215768 3165512 ~ 3288089 (+) False LOC120559392
TU62341 lncRNA upstream 250326 3105787 ~ 3253531 (+) False G46555
TU62343 lncRNA upstream 373373 3105787 ~ 3130484 (+) True G46555
TU62346 lncRNA upstream 394071 3041473 ~ 3109786 (+) False G46555
XR_005639283.1 lncRNA upstream 467922 3018811 ~ 3035935 (+) True LOC120559441
XR_005639284.1 lncRNA downstream 146990 3660590 ~ 3661927 (+) True LOC120559445
XR_005639285.1 lncRNA downstream 193005 3706605 ~ 3719155 (+) True LOC120559446
TU62875 lncRNA downstream 330197 3843797 ~ 3862562 (+) False gpr173
TU62873 lncRNA downstream 353551 3867151 ~ 3870238 (+) True G46996
TU62874 lncRNA downstream 356775 3870375 ~ 3872139 (+) True G46997
XM_039801114.1 mRNA upstream 199220 3279364 ~ 3304637 (+) True LOC120559414
XM_039801077.1 mRNA upstream 318677 3178297 ~ 3185180 (+) True LOC120559389
XM_039801078.1 mRNA upstream 318677 3178297 ~ 3185180 (+) False LOC120559389
XM_039801086.1 mRNA upstream 337409 3146481 ~ 3166448 (+) True LOC120559392
XM_039799572.1 mRNA upstream 677145 2825257 ~ 2826712 (+) True LOC120558536
XM_039801127.1 mRNA downstream 212361 3725961 ~ 3734391 (+) True LOC120559447
XM_039801128.1 mRNA downstream 212763 3726363 ~ 3734391 (+) False LOC120559447
XM_039801133.1 mRNA downstream 329464 3843064 ~ 3865798 (+) True gpr173
XM_039799378.1 mRNA downstream 444956 3958556 ~ 3982281 (+) True LOC120558400
XM_039799383.1 mRNA downstream 491665 4005265 ~ 4014601 (+) True LOC120558402
XR_005639249.1 other upstream 220687 3279361 ~ 3283170 (+) False LOC120559414
TU62381 other upstream 733404 2745898 ~ 2770453 (+) True G46574
TU62302 other upstream 1113345 2389946 ~ 2390512 (+) True G46530
TU62038 other upstream 1865687 1635948 ~ 1638170 (+) True G46328
TU62008 other upstream 1980626 1522685 ~ 1523231 (+) True G46305
TU63394 other downstream 2685446 6199046 ~ 6200594 (+) True G47444
TU63466 other downstream 3184411 6698011 ~ 6705887 (+) False ccm2l
TU63965 other downstream 4598841 8112441 ~ 8116228 (+) True G47903
TU64119 other downstream 4829151 8342751 ~ 8380392 (+) False pkig
TU64120 other downstream 4829318 8342918 ~ 8380578 (+) False pkig

Expression Profile