RNA id: XM_039801219.1


Basic Information

Item Value
RNA id XM_039801219.1
length 766
RNA type mRNA
GC content 0.45
exon number 11
gene id LOC120559501
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 4772932 ~ 4775358 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cgtgttatttgtacgctttcgagTGAGATCGGGTTGGCCACAGAGATCATGCTGGGGTTTGAAACCTAGTCCACGACAAAAAAATATGCTGAAATATGTCTTGGACCCCAAAAGAAATCcagatgaaacaattatacgAACCCAGTTTACCAAAGTGCAGCAAGTTACCTTGCAACGCAGAGACTTTTTGACTCTGGGCTTGGCACGGGAGTTGGAGGCCACAAATGATTTGGCAAACAAGGATTTTGTCCTCATACCTATTTGGAAACCAGGACACTACATGCTCTGTGTTTTgaagctgagagagagacaaatcCTTTTCCCAGACTCATTTCATCTGGAAGCCTCAGTTGGCTTTGGCGATCAACGTTACATTCAGATTTGCAGCGATCTTGCACAGAGGATTATCCCAGGAGAATGGACTGTGATATACAGCAAGGACATCAAAGGTCTCCCAAGACAGGAAGATGGCAATGCCTGTGGGATCTTCATGTTAATGTATGCTCTTTACATTGTGCTGGGGGCAGATTTTGACTTCACAACTGGTGACATGGACACAATCAGGACATGGTGGTGCCTGTTGCTCCTGTCTGGTCATTCAGTTGTCAGGTTCGCACAGAAAAGGAAATATGAAGATCCCATCATAATAGCAGATAAGGATAAGGAGGAGGCAAAGAGGCCCAGGACAATCCCTCCTCAACAGTCGGAACCTGTTGACCTGACCAAAGAGGGGATTCTGGAGGGCATCAATGTTTCtctaaaataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639291.1 lncRNA upstream 626 4769280 ~ 4772306 (+) True LOC120559496
XR_005639292.1 lncRNA upstream 626 4769280 ~ 4772306 (+) False LOC120559496
XR_005639293.1 lncRNA upstream 626 4769280 ~ 4772306 (+) False LOC120559496
XR_005639306.1 lncRNA upstream 6158 4762514 ~ 4766774 (+) True LOC120559518
XR_005639305.1 lncRNA upstream 6158 4764088 ~ 4766774 (+) False LOC120559518
TU63206 lncRNA downstream 2759 4778117 ~ 4778555 (+) True G47276
XR_005639339.1 lncRNA downstream 82910 4858268 ~ 4858785 (+) True LOC120559638
TU63242 lncRNA downstream 128791 4904149 ~ 4920830 (+) True G47307
TU63244 lncRNA downstream 129138 4904496 ~ 4914494 (+) True G47308
TU63252 lncRNA downstream 193571 4968929 ~ 4969299 (+) True G47310
XM_039799714.1 mRNA upstream 185868 4431388 ~ 4587064 (+) True LOC120558632
XM_039799715.1 mRNA upstream 185868 4477589 ~ 4587064 (+) False LOC120558632
XM_039800532.1 mRNA upstream 491406 4266875 ~ 4281526 (+) True LOC120559099
XM_039799356.1 mRNA upstream 514361 4254640 ~ 4258571 (+) True LOC120558381
XM_039801806.1 mRNA upstream 592596 4084694 ~ 4180336 (+) True LOC120559787
XM_039799230.1 mRNA downstream 600945 5376303 ~ 5387260 (+) False LOC120558307
XM_039799226.1 mRNA downstream 600945 5376303 ~ 5387260 (+) False LOC120558307
XM_039799229.1 mRNA downstream 600946 5376304 ~ 5387260 (+) True LOC120558307
XM_039799228.1 mRNA downstream 600946 5376304 ~ 5387260 (+) False LOC120558307
XM_039799227.1 mRNA downstream 600946 5376304 ~ 5387260 (+) False LOC120558307
XR_005639245.1 other upstream 1260448 3505308 ~ 3512484 (+) False LOC120559404
XR_005639249.1 other upstream 1489762 3279361 ~ 3283170 (+) False LOC120559414
TU62381 other upstream 2002479 2745898 ~ 2770453 (+) True G46574
TU62302 other upstream 2382420 2389946 ~ 2390512 (+) True G46530
TU62038 other upstream 3134762 1635948 ~ 1638170 (+) True G46328
TU63394 other downstream 1423688 6199046 ~ 6200594 (+) True G47444
TU63466 other downstream 1922653 6698011 ~ 6705887 (+) False ccm2l
TU63965 other downstream 3337083 8112441 ~ 8116228 (+) True G47903
TU64119 other downstream 3567393 8342751 ~ 8380392 (+) False pkig
TU64120 other downstream 3567560 8342918 ~ 8380578 (+) False pkig

Expression Profile