RNA id: TU63481


Basic Information

Item Value
RNA id TU63481
length 433
lncRNA type read_through
GC content 0.43
exon number 2
gene id G47517
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 6846048 ~ 7305481 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGATCACAAGGGGAGACATTGATTTCAGTGAGAAGGTCCTTGATGAGAAATCCTTTATCAGCCATGACCTCATCGCCTTCCTCAAGTAGACACAGGATCCCTGATTCTCTTGTGATCTCCTTGTCAGATATCGAACCTGTATACAGGTCACTGACAAATGTGACTAAACCTGAGGGAGAGATGCCAACTAGGCCCTTAAAGGTGGTGTTACCTTTGTAGTGGGAGTAGATTTCAGAGTTGAGAACTTTTGAACTAGGTCTCTGCACGTGTATTTCTGTACAATCTAATATAACTCTTGTAAGTGGGAAAGTGCTTTGGAAACAAGGAGGCATGAGCTCGTTTACAGTTTCTCTCGAAGGCCAAATTGGAAGTGATCCTAACATGAATTGTAGATAGTTTGCCCAGGTTACAACAGACCCTGCTTACAGTTGAC

Function

GO: NA

KEGG:

id description
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63469 lncRNA upstream 120850 6722739 ~ 6725198 (+) True G47508
TU63463 lncRNA upstream 124376 6646655 ~ 6721672 (+) False G47504
TU63465 lncRNA upstream 124376 6696577 ~ 6721672 (+) True G47504
TU63461 lncRNA upstream 157334 6632869 ~ 6688714 (+) True G47503
TU63438 lncRNA upstream 418050 6427468 ~ 6427998 (+) True G47482
XR_005639195.1 lncRNA downstream 4520 7310001 ~ 7313720 (+) False LOC120558808
XR_005639193.1 lncRNA downstream 4520 7310001 ~ 7313720 (+) False LOC120558808
XR_005639194.1 lncRNA downstream 5103 7310584 ~ 7313720 (+) True LOC120558808
XR_005639192.1 lncRNA downstream 5103 7310584 ~ 7313720 (+) False LOC120558808
XR_005639203.1 lncRNA downstream 8258 7313739 ~ 7316913 (+) True LOC120558816
XM_039800794.1 mRNA upstream 71946 6729702 ~ 6774102 (+) True cables2b
XM_039801845.1 mRNA upstream 125116 6697993 ~ 6720932 (+) True ccm2l
XM_039802013.1 mRNA upstream 162137 6579186 ~ 6683911 (+) True xkr7
XM_039801741.1 mRNA upstream 343868 6493569 ~ 6502180 (+) True sox18
XM_039801481.1 mRNA upstream 452546 6364874 ~ 6393502 (+) False rgs19
XM_039799772.1 mRNA downstream 328399 7633880 ~ 7650645 (+) True LOC120558666
XM_039799773.1 mRNA downstream 328399 7633880 ~ 7650645 (+) False LOC120558666
XM_039799776.1 mRNA downstream 346592 7652073 ~ 7671014 (+) True LOC120558668
XM_039799774.1 mRNA downstream 348620 7654101 ~ 7671014 (+) False LOC120558668
XM_039799775.1 mRNA downstream 348620 7654101 ~ 7671014 (+) False LOC120558668
TU63466 other upstream 140161 6698011 ~ 6705887 (+) False ccm2l
TU63394 other upstream 645454 6199046 ~ 6200594 (+) True G47444
XR_005639245.1 other upstream 3333564 3505308 ~ 3512484 (+) False LOC120559404
XR_005639249.1 other upstream 3562878 3279361 ~ 3283170 (+) False LOC120559414
TU62381 other upstream 4075595 2745898 ~ 2770453 (+) True G46574
TU63965 other downstream 806960 8112441 ~ 8116228 (+) True G47903
TU64119 other downstream 1037270 8342751 ~ 8380392 (+) False pkig
TU64120 other downstream 1037437 8342918 ~ 8380578 (+) False pkig
TU64124 other downstream 1037437 8342918 ~ 8380392 (+) False pkig
TU64121 other downstream 1063162 8368643 ~ 8380578 (+) False pkig

Expression Profile