RNA id: TU63546


Basic Information

Item Value
RNA id TU63546
length 336
lncRNA type sense_over
GC content 0.47
exon number 2
gene id LOC120558803
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 7161017 ~ 7252252 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTAGGACTTGAGGAGGTTCAGGACTTAGCCCGGAcccatttaaaggaacacgccgacttattgggactttagcttattcaccgtatcccccagagttagacagagtagaagtccatacatacccttctcatctccgtgcgtgtcgtaactctgtctgacacacccaccgctagcctagcttagcacagatcctggaggtaacccgctccatctagcctactgctcctaataagtgacaaaataacacgcaacattttcctatttacatggtgtgatttgtatagtcacagcgtgtacaaataacaaggtcacatgagacacagccatcttctaacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63521 lncRNA upstream 23523 6981415 ~ 7138886 (+) True G47536
XR_005639185.1 lncRNA upstream 79335 7082881 ~ 7083074 (+) True LOC120558802
TU63528 lncRNA upstream 98803 7062067 ~ 7063606 (+) True G47543
XR_005639201.1 lncRNA upstream 160696 7000551 ~ 7001713 (+) True LOC120558814
XR_005639190.1 lncRNA upstream 169237 6990735 ~ 6993172 (+) False LOC120558806
XR_005639195.1 lncRNA downstream 57749 7310001 ~ 7313720 (+) False LOC120558808
XR_005639193.1 lncRNA downstream 57749 7310001 ~ 7313720 (+) False LOC120558808
XR_005639194.1 lncRNA downstream 58332 7310584 ~ 7313720 (+) True LOC120558808
XR_005639192.1 lncRNA downstream 58332 7310584 ~ 7313720 (+) False LOC120558808
XR_005639203.1 lncRNA downstream 61487 7313739 ~ 7316913 (+) True LOC120558816
XM_039800063.1 mRNA upstream 13023 7143788 ~ 7149386 (+) True LOC120558799
XM_039799658.1 mRNA upstream 26567 7126624 ~ 7135842 (+) True LOC120558603
XM_039800048.1 mRNA upstream 96236 7027077 ~ 7066173 (+) False LOC120558791
XM_039800054.1 mRNA downstream 9450 7261702 ~ 7266435 (+) True LOC120558794
XM_039800058.1 mRNA downstream 19166 7271418 ~ 7279008 (+) True LOC120558796
XM_039799772.1 mRNA downstream 381628 7633880 ~ 7650645 (+) True LOC120558666
XM_039799773.1 mRNA downstream 381628 7633880 ~ 7650645 (+) False LOC120558666
XM_039799776.1 mRNA downstream 399821 7652073 ~ 7671014 (+) True LOC120558668
TU63466 other upstream 456522 6698011 ~ 6705887 (+) False ccm2l
TU63394 other upstream 961815 6199046 ~ 6200594 (+) True G47444
XR_005639245.1 other upstream 3649925 3505308 ~ 3512484 (+) False LOC120559404
XR_005639249.1 other upstream 3879239 3279361 ~ 3283170 (+) False LOC120559414
TU62381 other upstream 4391956 2745898 ~ 2770453 (+) True G46574
TU63965 other downstream 860189 8112441 ~ 8116228 (+) True G47903
TU64119 other downstream 1090499 8342751 ~ 8380392 (+) False pkig
TU64120 other downstream 1090666 8342918 ~ 8380578 (+) False pkig
TU64124 other downstream 1090666 8342918 ~ 8380392 (+) False pkig
TU64121 other downstream 1116391 8368643 ~ 8380578 (+) False pkig

Expression Profile