RNA id: TU63817


Basic Information

Item Value
RNA id TU63817
length 456
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G47794
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 7603099 ~ 7603554 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACCTATTTCATCATTGCAGTCATTAATCCTTCATTTGACTCTGtctaaaaatcacaaaaacaaatatcccAACATGACATAATAGCAAAGCACATAAACAACAGTTATTAAAGATatctcatttattttaaagttgaTGCAAAAATACAGCgtataaaatattaaatcatcTGATCTTTCTACCATCAATTTAAGAGTATGTGACTAGAACTGATTACAATGAAATGAATCAGCAATACTCCAAAAgccaaagatatttagtttaaagctgcaaagattagTAGATTGACAGAAATTGATATTTCATAAATGGTTTGTCATTTTTAAGCAGTAACTCTCCATTCATTCTCGTCAGCTTTTTCCAATGTGAGGATTTTGCTGCCTTTACCTTTATTATACCActttaaactgaatattttggggTTTAGGTTGTTACGTTCCATAGGCCgaactttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63811 lncRNA upstream 17142 7584663 ~ 7585957 (+) True G47789
TU63784 lncRNA upstream 134028 7468421 ~ 7469071 (+) True G47768
TU63777 lncRNA upstream 146360 7456475 ~ 7456739 (+) True G47762
XR_005639191.1 lncRNA upstream 207192 7393940 ~ 7395907 (+) True LOC120558807
TU63607 lncRNA upstream 207327 7394063 ~ 7395772 (+) False LOC120558807
TU63808 lncRNA downstream 4336 7607890 ~ 7702736 (+) True G47786
TU63822 lncRNA downstream 13686 7617240 ~ 7620089 (+) True G47798
TU63928 lncRNA downstream 238940 7842494 ~ 7902442 (+) True G47881
TU63971 lncRNA downstream 512826 8116380 ~ 8117222 (+) True G47909
TU64109 lncRNA downstream 728968 8332522 ~ 8333531 (+) True G48002
XM_039800058.1 mRNA upstream 324091 7271418 ~ 7279008 (+) True LOC120558796
XM_039800054.1 mRNA upstream 336664 7261702 ~ 7266435 (+) True LOC120558794
XM_039799659.1 mRNA upstream 422902 7172361 ~ 7180197 (+) True LOC120558604
XM_039800063.1 mRNA upstream 453713 7143788 ~ 7149386 (+) True LOC120558799
XM_039799658.1 mRNA upstream 467257 7126624 ~ 7135842 (+) True LOC120558603
XM_039799772.1 mRNA downstream 30326 7633880 ~ 7650645 (+) True LOC120558666
XM_039799773.1 mRNA downstream 30326 7633880 ~ 7650645 (+) False LOC120558666
XM_039799776.1 mRNA downstream 48519 7652073 ~ 7671014 (+) True LOC120558668
XM_039799774.1 mRNA downstream 50547 7654101 ~ 7671014 (+) False LOC120558668
XM_039799775.1 mRNA downstream 50547 7654101 ~ 7671014 (+) False LOC120558668
TU63466 other upstream 897212 6698011 ~ 6705887 (+) False ccm2l
TU63394 other upstream 1402505 6199046 ~ 6200594 (+) True G47444
XR_005639245.1 other upstream 4090615 3505308 ~ 3512484 (+) False LOC120559404
XR_005639249.1 other upstream 4319929 3279361 ~ 3283170 (+) False LOC120559414
TU62381 other upstream 4832646 2745898 ~ 2770453 (+) True G46574
TU63965 other downstream 508887 8112441 ~ 8116228 (+) True G47903
TU64119 other downstream 739197 8342751 ~ 8380392 (+) False pkig
TU64120 other downstream 739364 8342918 ~ 8380578 (+) False pkig
TU64124 other downstream 739364 8342918 ~ 8380392 (+) False pkig
TU64121 other downstream 765089 8368643 ~ 8380578 (+) False pkig

Expression Profile