RNA id: TU64370


Basic Information

Item Value
RNA id TU64370
length 405
lncRNA type inter_gene
GC content 0.53
exon number 2
gene id G48206
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 8843909 ~ 8851173 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gttcaatgcTGTAGGCTGCAACCCCAGCCAAAAGAAGGCGGCCCAAGCCGAGCCACATGCCCAACCCGTAATGCCGACCTGTCCCGCGGCGGCAAGGAccccaaacaacacacaacatcgccgctgttaaaaacatttgcgtatgagacatccgaaagaatacaaGCCGCGCATGAAGGAAAGCAGCCTCGCAGCATCGCCCAGGGCGTGGATGGAAGGCAGACGAAGGCTGCATCAATGTCGAGGAACCACTAGAGGCAGAGCAACGCAAGAGCTCGTCAGCGGTGACTGCCTGTTGCTCGGATgattgaaagtgtgtgtgtgtacacacatcaACAGAAGAGGATGGGGGTTGAAATGGAAACTGTCTGTGtcattgttttaaaaatagaacCACGATGTGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64368 lncRNA upstream 17233 8826458 ~ 8826676 (+) True G48205
TU64321 lncRNA upstream 96180 8743634 ~ 8747729 (+) True G48176
TU64322 lncRNA upstream 96180 8745451 ~ 8747729 (+) False G48176
TU64302 lncRNA upstream 127725 8715887 ~ 8716184 (+) True G48160
TU64300 lncRNA upstream 129341 8714319 ~ 8714568 (+) True G48158
TU64438 lncRNA downstream 275637 9126810 ~ 9127014 (+) True G48259
TU64443 lncRNA downstream 329390 9180563 ~ 9183148 (+) True G48264
TU64448 lncRNA downstream 338205 9189378 ~ 9192209 (+) True G48269
TU64485 lncRNA downstream 392181 9243354 ~ 9256285 (+) True G48294
TU64501 lncRNA downstream 435886 9287059 ~ 9287662 (+) True G48310
XM_039800916.1 mRNA upstream 181457 8654412 ~ 8662452 (+) False LOC120559293
XM_039800917.1 mRNA upstream 181457 8657067 ~ 8662452 (+) False LOC120559293
XM_039800907.1 mRNA upstream 189593 8645778 ~ 8654316 (+) True LOC120559286
XM_039800901.1 mRNA upstream 211084 8605863 ~ 8632825 (+) False itih6
XM_039800854.1 mRNA downstream 226580 9077753 ~ 9121912 (+) True LOC120559255
XM_039800356.1 mRNA downstream 349579 9200752 ~ 9210559 (+) True pfdn4
XM_039799463.1 mRNA downstream 382987 9234160 ~ 9236016 (+) True LOC120558451
XM_039800158.1 mRNA downstream 506799 9357972 ~ 9366078 (+) False cd40
XM_039800157.1 mRNA downstream 506799 9357972 ~ 9366077 (+) True cd40
TU64306 other upstream 117357 8716767 ~ 8726552 (+) True G48162
TU64205 other upstream 155945 8680282 ~ 8687964 (+) False G48077
TU64206 other upstream 155945 8681925 ~ 8687964 (+) True G48077
TU64207 other upstream 155945 8684798 ~ 8687964 (+) False G48077
TU64122 other upstream 463517 8368643 ~ 8380392 (+) False pkig
XR_005639234.1 other downstream 139314 8990487 ~ 9118201 (+) False LOC120559255
TU64544 other downstream 553051 9404224 ~ 9429947 (+) True G48347
TU64964 other downstream 1762858 10614031 ~ 10703381 (+) False G48640
TU65107 other downstream 2321422 11172595 ~ 11173654 (+) True G48752
TU65120 other downstream 2463489 11314662 ~ 11315992 (+) True G48765

Expression Profile