RNA id: TU64609


Basic Information

Item Value
RNA id TU64609
length 623
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G48396
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 9722163 ~ 9726205 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTGACCTACCCGCATATGTGATTCATGTCACGCCGTATGAACAATAACcgcgggagtgagaaacacaacgCATTGTGAGGTCTTAAGACAATGTTACgtagcgagtaacgttagtacaacatcacagagctaacgttacataccgGGTAACCTTAGTACACGGGGGAGTtacaggctgcggctggaaatcCTTGGGACGGTATCATGGCAACAGGCTTGTTTCGGCCCGCCTCGGCTATCAGCAGGACTCGGACTGCTCGGCTCTGTTTGGAGTAACTTAGGCTGCTGTTAAAAAATCCAAGGCATGCTAAAAACATAATATACAGGAGCCTGGCATCCCTAAGAGAGAGTCTCGCCGTCTGTTCCTCTCTGCAGGTAGCCATGTTTGGAAGTGCTGACAAACAGAGAAGAAAGACAGAATGCATGGGGGTCTGGGCCGGTGGCTGGCTCCTCGCCAAAATGTCACGTCCTCCCTTCCGTTTGGGCTCCAACTATGGTCACCTCTCGTAACCACgcttgattgtgtgtgtttggagtaAACTGCGGCCCTTTTACTAATAAAGAGCAGTGCTTTGGATCAACTTCCCTGCTACATATTCATTTTGAGTTAGTAAATAAAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64591 lncRNA upstream 125730 9596060 ~ 9596433 (+) True G48381
TU64566 lncRNA upstream 171340 9546074 ~ 9550823 (+) True G48365
TU64579 lncRNA upstream 200512 9520758 ~ 9521651 (+) True G48369
TU64534 lncRNA upstream 340719 9367885 ~ 9381444 (+) False G48338
TU64533 lncRNA upstream 340719 9378958 ~ 9381444 (+) True G48338
TU64610 lncRNA downstream 1623 9727828 ~ 9730567 (+) True G48397
TU64611 lncRNA downstream 25125 9751330 ~ 9751648 (+) True G48398
TU64612 lncRNA downstream 25821 9752026 ~ 9752545 (+) True G48399
TU64613 lncRNA downstream 37851 9764056 ~ 9766395 (+) True G48400
TU64628 lncRNA downstream 77534 9803739 ~ 9804346 (+) True G48415
XM_039799983.1 mRNA upstream 32833 9597626 ~ 9689330 (+) True syt6a
XM_039799976.1 mRNA upstream 177926 9535407 ~ 9544237 (+) False zbtb48
XM_039799973.1 mRNA upstream 177926 9535470 ~ 9544237 (+) True zbtb48
XM_039799974.1 mRNA upstream 177926 9535474 ~ 9544237 (+) False zbtb48
XM_039799975.1 mRNA upstream 177926 9535475 ~ 9544237 (+) False zbtb48
XM_039800365.1 mRNA downstream 27864 9754069 ~ 9761924 (+) True sdf4
XM_039800988.1 mRNA downstream 175785 9901990 ~ 9904443 (+) True LOC120559338
XM_039800989.1 mRNA downstream 190322 9916527 ~ 9918632 (+) True LOC120559339
XM_039801490.1 mRNA downstream 196395 9922600 ~ 9925081 (+) True ubxn10
XM_039801491.1 mRNA downstream 210344 9936549 ~ 9969923 (+) True vwa5b1
TU64544 other upstream 292216 9404224 ~ 9429947 (+) True G48347
XR_005639234.1 other upstream 603962 8990487 ~ 9118201 (+) False LOC120559255
TU64306 other upstream 995611 8716767 ~ 8726552 (+) True G48162
TU64206 other upstream 1034199 8681925 ~ 8687964 (+) True G48077
TU64964 other downstream 887826 10614031 ~ 10703381 (+) False G48640
TU65107 other downstream 1446390 11172595 ~ 11173654 (+) True G48752
TU65120 other downstream 1588457 11314662 ~ 11315992 (+) True G48765
TU65506 other downstream 2366574 12092779 ~ 12096837 (+) False LOC120559364
XR_005639365.1 other downstream 2456004 12182209 ~ 12210409 (+) False nol4la

Expression Profile