RNA id: TU64776


Basic Information

Item Value
RNA id TU64776
length 1318
lncRNA type sense_over
GC content 0.39
exon number 1
gene id agmat
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 10139598 ~ 10151251 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aaaaaaattgacaaaacaaGTAAAGCAGAACTTAGCACAAAACTAGACATGGCACAGAAGCAAAAAGAttagcaacaaaacaaagaacaggtTACAAGATAAAACAACAGAGCATAGAGTACAAAGATTAGACACAGCTGTTGAGACGGTAAAAGCAATAGCGAACTAAGAGGAAACGATAAGTTCATATACAgaatacatacataataaataGGCGTAGTGCTgacatgtatatatttattgacCATCCATTGTTTTAGCTGCTTAGTAAAAGACTTCTATGTGTTTAATTGTCTGATATGGTATTTGATTCCACTCCAATTCCAGTTCATACCAACTGCACAGCTTAAAACACTTCTAATATGATGTGGTTCATGTTGCATCACCTGGTCATTTTCTCTGAATTATCAGGTGTGAACGGATGTTAAAAAGACCAAGCCTAGGTCTCGTTTGTCCTTGGTCTATGGAACTGGTGACAGGAGGACAGCTCGTAAAATACCAATGTGCTTTTTCGTTATTTTACATGCAGAGAACTAACCCAAGCATGTAGGGAAAAAAAACGTGAGGTTAAGCTGTAATGAACAAAGTGCAACGTGTTCAGTTCAGAGATAAGAGTGAATAATGAAACCAAACCGAGTGAATAATTAAACCAAACCTGGGGGGAAAGAAAGCAGAACTGTTCTTTTCTCGAGCTCCGTGTTGTTGGGATTCAGCTGTATGTGTCAACGGGCTTGTCTGTGTTCACCAGGCGGCCTCTGAAAGGCCCTGCTCCATAAAGTCAAATTACAAGCTTTTAAAAGCTAAACATGCCAACTATGGCGATGTAGAGATAAATTATTGATGTTTGTGTTAGAAAATGACCTTTTAGATATATAGAAAAGGCAATGTTGTAATGCCTGATGAAGATCCAATGGTGATAGAAAAGTTGTCTACTTAATAAATAAGGTTATGGTTTTTATTTAGTGTGCAGGCATTACTCTTTTCTGTCACGTCTCGTCTCTGtcaagttttgttttttagtttgtttcatGTTTCGGTTtagttttccatttcctgttttattttgaaacttacCGTCTCGTCTCATTTCAGGTCCGTTGTCTTCCTGGTCTTTGTTCTCCTTCCCGCCTGTGTGATTACCTGTCCCCACCCCTATGTgttgcacctgtgtctcattgtctcCCCTGTCTTGTGTATTTAAGCTCAGTCTTTCCTTTACTCCTGTGCGAGATCGTCTGTATTTCTAGTGTGCAGCCTTTGAGGGTTTTTCCCTGTTTCCCTTGGATTTTTGACCATTGCCCTTTGCCTGTCGTTTCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64760 lncRNA upstream 135497 10010836 ~ 10014383 (+) True G48507
TU64733 lncRNA upstream 224810 9924700 ~ 9925070 (+) False ubxn10
TU64731 lncRNA upstream 229072 9920048 ~ 9920808 (+) True G48481
TU64628 lncRNA upstream 345534 9803739 ~ 9804346 (+) True G48415
TU64613 lncRNA upstream 383485 9764056 ~ 9766395 (+) True G48400
TU64888 lncRNA downstream 252855 10404052 ~ 10404759 (+) True G48594
TU64897 lncRNA downstream 360625 10511822 ~ 10542926 (+) True G48602
XR_005639230.1 lncRNA downstream 392812 10544009 ~ 10560240 (+) True LOC120559193
TU64943 lncRNA downstream 434962 10586159 ~ 10586543 (+) True G48639
TU64973 lncRNA downstream 463010 10614207 ~ 10750428 (+) True G48640
XM_039800014.1 mRNA upstream 18626 10118685 ~ 10131254 (+) True pink1
XM_039800012.1 mRNA upstream 33045 10023340 ~ 10116835 (+) False LOC120558778
XM_039800009.1 mRNA upstream 33045 10029532 ~ 10116835 (+) False LOC120558778
XM_039800011.1 mRNA upstream 33045 10042489 ~ 10116835 (+) True LOC120558778
XM_039799236.1 mRNA upstream 150566 9996288 ~ 9999314 (+) True fam43b
XM_039799814.1 mRNA downstream 11805 10163002 ~ 10288140 (+) True hspg2
XM_039799820.1 mRNA downstream 11805 10163002 ~ 10288140 (+) False hspg2
XM_039799821.1 mRNA downstream 11805 10163002 ~ 10288140 (+) False hspg2
XM_039799817.1 mRNA downstream 11805 10163002 ~ 10288140 (+) False hspg2
XM_039799824.1 mRNA downstream 11805 10163002 ~ 10288140 (+) False hspg2
TU64544 other upstream 719933 9404224 ~ 9429947 (+) True G48347
XR_005639234.1 other upstream 1031679 8990487 ~ 9118201 (+) False LOC120559255
TU64306 other upstream 1423328 8716767 ~ 8726552 (+) True G48162
TU64206 other upstream 1461916 8681925 ~ 8687964 (+) True G48077
TU64964 other downstream 462834 10614031 ~ 10703381 (+) False G48640
TU65107 other downstream 1021398 11172595 ~ 11173654 (+) True G48752
TU65120 other downstream 1163465 11314662 ~ 11315992 (+) True G48765
TU65506 other downstream 1941582 12092779 ~ 12096837 (+) False LOC120559364
XR_005639365.1 other downstream 2031012 12182209 ~ 12210409 (+) False nol4la

Expression Profile