RNA id: XM_039801749.1


Basic Information

Item Value
RNA id XM_039801749.1
length 3277
RNA type mRNA
GC content 0.43
exon number 7
gene id agmat
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 10139598 ~ 10151251 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCGTAGGGAAACACTTAAAGTAGCAGCTGGAGTGAACTGTGTCATCACAACTGACACCACTCCATGTCATACTCAGAACTCGCAGCAAGTATGTTTTCATTTTGGAGAACCCTTACTATACCTCGCGCTGCTAGTGGGACTGCAGCGGACTTGTTCTTTCTATCTCGTCAAACGTCGGTTCTCTACCCCAACAGAAAGTGCTCGGGGAAAAAGTACAATGTGCCACCGAGCGCCGAGTTTGTTGCCAGGGTGTCGGGGATCCCCACCATGGCCAAGTTACCTTTCCAGGAGACAGCTGACGGGCTAGACGCGGCGTTTATCGGGGTCCCAATTGATACCGGGACCTCCAACCGACCCGGAGCAAGGTTTGGCCCCCGGCAGATCCGAGTGGAATCTGCCATGTTGAGATCTTACAACAGTGGCACCAGGGCAGCGCCTTACGAGTCCCTCATGGTGGCTGATATTGGGGACGTCAATGTGAATGTGTATGACCTGAAGGACACCTGCAAACGCATCCGGGAGGCCTACAGAAAGATCCTGGCTACCGGCTGTATTCCTCTGACTATGGGTGGCGATCACACAATTGCATATCCAATCTTGCAAGCTGTTGCTGAGAAGCATGGCCCAGTGGGGCTGATCCACGTGGATGCTCATGCTGACACCAGTGATGTGGTCTTGGGGGAGAAGATTGGACATGGGACTCCATTCAGACGTTGTGTGGAGGAAGGGCTACTGGACTGCAAGAGAGTGGTTCAGATCGGCCTGCGTGGTTCAGGCTACTCTCCAGATTCCTATGAATGGAGCCGGGCGCAGGGTTTCCGTGTGGTACAAGCGGAAGAGTGTTGGTTCAAATCTCTTGCACCTGTGATGgctgaggtcagaggtcagatgGGCGGCGGTCCAGTATACCTCAGCTTCGACATTGATGCTCTTGACCCGGGCTTTGCCCCGGGAACAGGCACACCAGAGATAGCAGGGCTTACTCCCATACAGggagtTGAGATTATTCGGGGCTGTCGTGGTCTAAACCTTGTTGGATGTGATCTGGTGGAGGTGTCTCCACCCTACGACACCACAGgAAACACTGCACTGACTGGTGCCAACCTTCTTTTTGAAATGTTGTGCGTCCTCCCAAAAATGAAATACTACTGATCATTACAGACTACACGcacaacagaacagaacagTTTGTTCATAATAATCAATTGAGCAGGCTGCCCTGCTGAATAAGCCAGTAAGGAAGGAAATTACCCAACATATAcaatttttaaagtttaaatcaATAAACATATTGCATTTGACTGTAGCAGACATCATGTACACTAGCTGGTAAAAAGCGTTTTGATAAATCAAAGTCAAAAATATTCTCATCTGTCAAGTCATGTAAACTTggttacatgaaataataatctgagGTTCCATAGATGACCTGATTATGTCATGTATAACACAGTACCAATAAAATTATATTAACGACATTTTTACAGACAAATGAATGAATCAAGCACACGCTAAGTTTGCTTTCCTGTGTCATGTCACATAATTCTATTGTATCATATTCATACAATGCCTTTTGGAAAACATTAAGAACTTGAAATGCTTGTTATGTTTGCTACATATAGGCTATAGCTATACTGTAGCATCTGGCAGTTGTTTGGACATGTATGGCTGTACCTGCGGTGCTCGCTGCACTCTCCTGGTTCTGCATGTGTGGTGCTGTTGCAGTTGGTACTCACGGGCAAATCTCAAAACTTCCTCCACATTGGTAGAGcccaatgaaataaaaaacctGGCTCCTAAAATAAAAGGTCTCTTTATTGTGTGTGACCAGCAGGATGCAGTATCTGAGGCTATTTTTCAGATGTAGACCCCTGgcatcaatgttaaaaaaaatacaaagaaacaaaaaaaattgacaaaacaaGTAAAGCAGAACTTAGCACAAAACTAGACATGGCACAGAAGCAAAAAGAttagcaacaaaacaaagaacaggtTACAAGATAAAACAACAGAGCATAGAGTACAAAGATTAGACACAGCTGTTGAGACGGTAAAAGCAATAGCGAACTAAGAGGAAACGATAAGTTCATATACAgaatacatacataataaataGGCGTAGTGCTgacatgtatatatttattgacCATCCATTGTTTTAGCTGCTTAGTAAAAGACTTCTATGTGTTTAATTGTCTGATATGGTATTTGATTCCACTCCAATTCCAGTTCATACCAACTGCACAGCTTAAAACACTTCTAATATGATGTGGTTCATGTTGCATCACCTGGTCATTTTCTCTGAATTATCAGGTGTGAACGGATGTTAAAAAGACCAAGCCTAGGTCTCGTTTGTCCTTGGTCTATGGAACTGGTGACAGGAGGACAGCTCGTAAAATACCAATGTGCTTTTTCGTTATTTTACATGCAGAGAACTAACCCAAGCATGTAGGGAAAAAAAACGTGAGGTTAAGCTGTAATGAACAAAGTGCAACGTGTTCAGTTCAGAGATAAGAGTGAATAATGAAACCAAACCGAGTGAATAATTAAACCAAACCTGGGGGGAAAGAAAGCAGAACTGTTCTTTTCTCGAGCTCCGTGTTGTTGGGATTCAGCTGTATGTGTCAACGGGCTTGTCTGTGTTCACCAGGCGGCCTCTGAAAGGCCCTGCTCCATAAAGTCAAATTACAAGCTTTTAAAAGCTAAACATGCCAACTATGGCGATGTAGAGATAAATTATTGATGTTTGTGTTAGAAAATGACCTTTTAGATATATAGAAAAGGCAATGTTGTAATGCCTGATGAAGATCCAATGGTGATAGAAAAGTTGTCTACTTAATAAATAAGGTTATGGTTTTTATTTAGTGTGCAGGCATTACTCTTTTCTGTCACGTCTCGTCTCTGtcaagttttgttttttagtttgtttcatGTTTCGGTTtagttttccatttcctgttttattttgaaacttacCGTCTCGTCTCATTTCAGGTCCGTTGTCTTCCTGGTCTTTGTTCTCCTTCCCGCCTGTGTGATTACCTGTCCCCACCCCTATGTgttgcacctgtgtctcattgtctcCCCTGTCTTGTGTATTTAAGCTCAGTCTTTCCTTTACTCCTGTGCGAGATCGTCTGTATTTCTAGTGTGCAGCCTTTGAGGGTTTTTCCCTGTTTCCCTTGGATTTTTGACCATTGCCCTTTGCCTGTCGTTTCTTGGACACTGTTGCCTGAAAGTTCTTTCAGCGTGCTAATAAAACCATTGAACTTTA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0046872 metal ion binding molecular_function
GO:0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines molecular_function

KEGG:

id description
K01480 speB; agmatinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64760 lncRNA upstream 125215 10010836 ~ 10014383 (+) True G48507
TU64733 lncRNA upstream 214528 9924700 ~ 9925070 (+) False ubxn10
TU64731 lncRNA upstream 218790 9920048 ~ 9920808 (+) True G48481
TU64628 lncRNA upstream 335252 9803739 ~ 9804346 (+) True G48415
TU64613 lncRNA upstream 373203 9764056 ~ 9766395 (+) True G48400
TU64888 lncRNA downstream 252801 10404052 ~ 10404759 (+) True G48594
TU64897 lncRNA downstream 360571 10511822 ~ 10542926 (+) True G48602
XR_005639230.1 lncRNA downstream 392758 10544009 ~ 10560240 (+) True LOC120559193
TU64943 lncRNA downstream 434908 10586159 ~ 10586543 (+) True G48639
TU64973 lncRNA downstream 462956 10614207 ~ 10750428 (+) True G48640
XM_039800014.1 mRNA upstream 8344 10118685 ~ 10131254 (+) True pink1
XM_039800012.1 mRNA upstream 22763 10023340 ~ 10116835 (+) False LOC120558778
XM_039800009.1 mRNA upstream 22763 10029532 ~ 10116835 (+) False LOC120558778
XM_039800011.1 mRNA upstream 22763 10042489 ~ 10116835 (+) True LOC120558778
XM_039799236.1 mRNA upstream 140284 9996288 ~ 9999314 (+) True fam43b
XM_039799814.1 mRNA downstream 11751 10163002 ~ 10288140 (+) True hspg2
XM_039799820.1 mRNA downstream 11751 10163002 ~ 10288140 (+) False hspg2
XM_039799821.1 mRNA downstream 11751 10163002 ~ 10288140 (+) False hspg2
XM_039799817.1 mRNA downstream 11751 10163002 ~ 10288140 (+) False hspg2
XM_039799824.1 mRNA downstream 11751 10163002 ~ 10288140 (+) False hspg2
TU64544 other upstream 709651 9404224 ~ 9429947 (+) True G48347
XR_005639234.1 other upstream 1021397 8990487 ~ 9118201 (+) False LOC120559255
TU64306 other upstream 1413046 8716767 ~ 8726552 (+) True G48162
TU64206 other upstream 1451634 8681925 ~ 8687964 (+) True G48077
TU64964 other downstream 462780 10614031 ~ 10703381 (+) False G48640
TU65107 other downstream 1021344 11172595 ~ 11173654 (+) True G48752
TU65120 other downstream 1163411 11314662 ~ 11315992 (+) True G48765
TU65506 other downstream 1941528 12092779 ~ 12096837 (+) False LOC120559364
XR_005639365.1 other downstream 2030958 12182209 ~ 12210409 (+) False nol4la

Expression Profile