RNA id: TU64897


Basic Information

Item Value
RNA id TU64897
length 1068
lncRNA type read_through
GC content 0.44
exon number 2
gene id G48602
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 10511822 ~ 10542926 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

catccacgcGCTGCGTAgtgaaggaaggtctgactactccacacagcatgccgggatgggagaaaaacctgctgtggtttattggcatttctctaaaccaatcgTCATcggtggcgctaagcgccggacggagccgcTGTGAAATAgtcatgcgagagaaaactcggGGAAaagatttaccctgcagagatctgaggagcagttaaccatagtcctcagaaatccaccggaggttaaaattccaacacaaagaaagcggaaggtgacggacatccggccgaaaagagggacatcaagcgcaatttccggtggcaccggagcaatcccggaagtggaacatcgtggatctAGACTAGTCTGTGTGTAACCGAGAGTGTTCCccgcgtgtctctacgacgtgtaacgtcagacagccaatcagcagcattattagatctgggtagaagcatgctgcatgctcattggctcactgacgctgatgagattcaCTCCTTAGGTAtttaaatttggtattgaatgacgaggcacaTTTCGATACTTtgatactaaggaggcaattcaGTCGGTGCCTGAAAAGTTATGgaagttcggtacccagccctaagaATTGTAAAATGGGGATTGGTCAAGCAGCCACGCTGCatcttgtttttattgtttttctatTTATAAAAACTAGTGCTCACATGATGATTTGATTTTACATCTGCATGTCGCCTGGAAGAAACAATTACTAAATCATAGTATCCTACAGCACATACTAGATCCCATTCAggaatctgattggtttaataTATTATTGTTTGTCAGAAACATGACTTACTAGCTCAACGTAGAAATAAGTTGACAGTTCCAATATTGTCCCATCAGCCTTTggttgtatttgttgtgatgCTCTGTGTTCCAGCACCAATGATTGCTGCTGTTAATGTTTGTACCGAGGCATTTTTCATCATATTGTTATCTGTCAGTATCCTGGATGAAAAGTTACAGACAGTAGGGATCCGCTGCCAAGATGTTTCAGGCTTGTTAAGTaggaggaaacaaaaaaaaaaaacacaatgacaa

Function

GO:

id name namespace
GO:0009069 serine family amino acid metabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64888 lncRNA upstream 107063 10404052 ~ 10404759 (+) True G48594
TU64776 lncRNA upstream 360625 10149880 ~ 10151197 (+) False agmat
TU64760 lncRNA upstream 497439 10010836 ~ 10014383 (+) True G48507
TU64733 lncRNA upstream 586752 9924700 ~ 9925070 (+) False ubxn10
TU64731 lncRNA upstream 591014 9920048 ~ 9920808 (+) True G48481
XR_005639230.1 lncRNA downstream 1083 10544009 ~ 10560240 (+) True LOC120559193
TU64943 lncRNA downstream 43233 10586159 ~ 10586543 (+) True G48639
TU64973 lncRNA downstream 71281 10614207 ~ 10750428 (+) True G48640
TU64954 lncRNA downstream 80965 10623891 ~ 10703381 (+) False G48640
TU64968 lncRNA downstream 80965 10623891 ~ 10703381 (+) False G48640
XM_039799835.1 mRNA upstream 195186 10303395 ~ 10316636 (+) False tmem269
XM_039799834.1 mRNA upstream 195186 10303427 ~ 10316636 (+) True tmem269
XM_039799836.1 mRNA upstream 195186 10306488 ~ 10316636 (+) False tmem269
XM_039799827.1 mRNA upstream 223682 10163003 ~ 10288140 (+) False hspg2
XM_039800732.1 mRNA downstream 31675 10574601 ~ 10583529 (+) True LOC120559192
XM_039799394.1 mRNA downstream 50858 10593784 ~ 10747553 (+) True LOC120558406
XM_039799395.1 mRNA downstream 215471 10758397 ~ 10811552 (+) True LOC120558407
XM_039799516.1 mRNA downstream 774504 11317430 ~ 11328619 (+) True LOC120558497
XM_039799539.1 mRNA downstream 809688 11352614 ~ 11382149 (+) False rapgef3
TU64544 other upstream 1081875 9404224 ~ 9429947 (+) True G48347
XR_005639234.1 other upstream 1393621 8990487 ~ 9118201 (+) False LOC120559255
TU64306 other upstream 1785270 8716767 ~ 8726552 (+) True G48162
TU64206 other upstream 1823858 8681925 ~ 8687964 (+) True G48077
TU64964 other downstream 71105 10614031 ~ 10703381 (+) False G48640
TU65107 other downstream 629669 11172595 ~ 11173654 (+) True G48752
TU65120 other downstream 771736 11314662 ~ 11315992 (+) True G48765
TU65506 other downstream 1549853 12092779 ~ 12096837 (+) False LOC120559364
XR_005639365.1 other downstream 1639283 12182209 ~ 12210409 (+) False nol4la

Expression Profile