RNA id: TU64943


Basic Information

Item Value
RNA id TU64943
length 385
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G48639
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 10586159 ~ 10586543 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aaaaaaacgtattggtttatgttaggcagattataaaacgtttttttctcaaacatgtcatgtccttttgtcgacgatcccgctgatgaaaaagctgtattacttcacagagagtttacgtcaggagatgatattgagtcccgactatagatgtattttcatttccacataaccgatttgagaggtatttttttcacagtccattagatatgtagataccttatccgtcctcatatcactaacatcaaccatcgtggacaggctttatcATCCAAGCAGAATCTTTGTgttgcattacgttttttgcaaacggcagttttctttataacattggtgatgcggagcatagCCTACTGTAATAGTAatgccactgtatgcagagccg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639230.1 lncRNA upstream 25919 10544009 ~ 10560240 (+) True LOC120559193
TU64897 lncRNA upstream 43233 10511822 ~ 10542926 (+) True G48602
TU64888 lncRNA upstream 181400 10404052 ~ 10404759 (+) True G48594
TU64776 lncRNA upstream 434962 10149880 ~ 10151197 (+) False agmat
TU64760 lncRNA upstream 571776 10010836 ~ 10014383 (+) True G48507
TU64973 lncRNA downstream 27664 10614207 ~ 10750428 (+) True G48640
TU64954 lncRNA downstream 37348 10623891 ~ 10703381 (+) False G48640
TU64968 lncRNA downstream 37348 10623891 ~ 10703381 (+) False G48640
XR_005639112.1 lncRNA downstream 49933 10636476 ~ 10637645 (+) True LOC120558408
TU64965 lncRNA downstream 51064 10637607 ~ 10672020 (+) False G48640
XM_039800732.1 mRNA upstream 2630 10574601 ~ 10583529 (+) True LOC120559192
XM_039800729.1 mRNA upstream 45807 10530663 ~ 10540352 (+) True LOC120559190
XM_039799829.1 mRNA upstream 59825 10326748 ~ 10526334 (+) True magi3a
XM_039799830.1 mRNA upstream 59825 10326748 ~ 10526334 (+) False magi3a
XM_039799831.1 mRNA upstream 63061 10326748 ~ 10523098 (+) False magi3a
XM_039799394.1 mRNA downstream 7241 10593784 ~ 10747553 (+) True LOC120558406
XM_039799395.1 mRNA downstream 171854 10758397 ~ 10811552 (+) True LOC120558407
XM_039799516.1 mRNA downstream 730887 11317430 ~ 11328619 (+) True LOC120558497
XM_039799539.1 mRNA downstream 766071 11352614 ~ 11382149 (+) False rapgef3
XM_039799541.1 mRNA downstream 766071 11352614 ~ 11382149 (+) False rapgef3
TU64544 other upstream 1156212 9404224 ~ 9429947 (+) True G48347
XR_005639234.1 other upstream 1467958 8990487 ~ 9118201 (+) False LOC120559255
TU64306 other upstream 1859607 8716767 ~ 8726552 (+) True G48162
TU64206 other upstream 1898195 8681925 ~ 8687964 (+) True G48077
TU64964 other downstream 27488 10614031 ~ 10703381 (+) False G48640
TU65107 other downstream 586052 11172595 ~ 11173654 (+) True G48752
TU65120 other downstream 728119 11314662 ~ 11315992 (+) True G48765
TU65506 other downstream 1506236 12092779 ~ 12096837 (+) False LOC120559364
XR_005639365.1 other downstream 1595666 12182209 ~ 12210409 (+) False nol4la

Expression Profile