RNA id: TU64965


Basic Information

Item Value
RNA id TU64965
length 2352
lncRNA type sense_over
GC content 0.41
exon number 2
gene id G48640
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 10614031 ~ 10750428 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aagtgtgtgtgtgtgtgttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggcagtgtgttagagtgagggagaagtgagagagtgacggcgattagcttagGAGCATGTGCCGAGTCTAGAGTCATAATgacagaaacaaagtgtctcccctgttctttctgaccacggtgggaaatctggagcaggaaaagttaaccttctccttgatttcatgttgtttatggagaaggagaagcaggaaatgagtcgggggaaatgcaacgctaccaagccacggccgagcgacgtgcatCGCTGCGACGCatagttaaatttttcgagaggtgcacttCAGGCTAGGCGTAGGGTTCGGCGTAGAGTAGAGGGTGACAATTTTTTGGGATTCCCGCGGGTCACATGATGCCCTACGGGAGTCAATTTCACTGTCGGTAACGTTTTCAGGACGGATAGAGCATAGAAATCAACGGGAGCGAGACGGCGCCggagattaaattaaaaaatgacgCTGCAATGTGGTGAGTGCGCCCAAAGATTGCGAGGCATTTCATTTTAGAAAAGAGAACCACTTACAACTCACAATTTGTTTGTTGAATGGGAATACCGTGACCGGCGGGAGTCCCGAAAAATTGTCActacccaaccctaacccacCCCCCAGCAGTGAGAGACAAACggctctgctctgcagcgctgcATTCACACTACTTGTGTTATAACATCAGCGCAGCAGAACAGAGGAGCTGCTCTCGCTCCCTCATCGCTGCAGCTGTAcaaacacagttacacacacacacacagtctgataACTTTAGACAACTTAGGGAACGAAACGGAAGCGGGATGGGATACGGGAGTATTTTTCTTGGGATTTTGCaggacaggatttttttttttttgggggggggggcagtcacGTGATTGGGACGTGACGGGAGTATTTTCGTGGGCTCGATTCCCGTGTCACCCTATaacgcagaggggtctgtgggggtacgccgtcgattctacgcagaaacataaaaaggccttaaggAACTTCATTCTCTGCTAAGGACACCATTACTCCCACTATATCTTCACATAggaaatatttgtttgctgctatattaatggTCTGAATGTCGAGTACGGCCCCTTTTAACTCCATGTTGATTTTAAACTTTTGCACTATAGCTTAGAGCACAGCTCAGCTTGCCCATTGCAGCTCAGGTACACCGATGGCTTGAAACAAGCAAAATCAGTAAGGAATGTTTGCATGCTTGACCCTAAATACAGCTGTAAGAATGTAATAGTTTTTGTATAAAATTTAGAAACTTTAAAACCGATCAAAGTCTATCAATTTCAGTTTGATGCTTAAGAACACAGTGAATTTGCCTCTATTTACTTCTGTAAGAAATGTCACCATATATGTAACTGGAAtggatataataatacattgtgtaaatgagaggctCCTAGCCGATAAACCAGTCCTCCAGTCTTGTAAATAACAATGGGATCTGTGAAACAGTCCCAAGCATAGTGCCTAAATAAAAGCCATGTTCCATATGCCTTATTTAAAAAAGCCAAGTATTTTAGCTTGTTGTTTGTCAGTTTGCTAATAGAGGCTTAATGGTAGGCCTACCTTAACTGTGTATGCTTAATAATTGGTCatgtttaatggcatttttggCAAATTCTTTGTGCCATGTCTGTTGTGTAGCTTCACCAAATGAATTTAAAACTGTTTTCTTTGACAAggaaacatttaaattaataattaaaagaaataattgATCAGGTATTGGTTTTGTAGACATCTGTCTTCTAGAGTGTCAGATTAATATGTGTATACCCCCACACTACTGTGAAGGAGATTCATACTTTAAGAGTATTAGAACACAGGTATTGTGTCTATGGTTAAATAAAGATGTATAGACTGATTTGTGATTGAAAATGTTGCACTTGCCTggctttttatctgtttttattttaactaaATCATGTGTCTCCCATCTCAGTGAGTTTTATATTATGTTGaggaaagcttttattttgacatcactctttgtaattaattattgaaataaaacaacagtgtaaatggactgcatttattaCAATTGTTGCCTGTAATTCagccattcactcacacactgtAGGCCAGGTGTGGCCAACCATCTGGAGTCATTTAGAACATGCTCTGACACGTGGACAGCCATGGATCGAACCGCCGAGAATTTTATTACAAATATTAAAAAGGTCCGAGTGTAATATGTCACACAAGAATCATAGTGTATTATGTAATAAGTTAATAAAAAAGTAGTGGTATAGTATTTCAGAAAATGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64943 lncRNA upstream 51064 10586159 ~ 10586543 (+) True G48639
XR_005639230.1 lncRNA upstream 77367 10544009 ~ 10560240 (+) True LOC120559193
TU64897 lncRNA upstream 94681 10511822 ~ 10542926 (+) True G48602
TU64888 lncRNA upstream 232848 10404052 ~ 10404759 (+) True G48594
TU64776 lncRNA upstream 486410 10149880 ~ 10151197 (+) False agmat
TU64982 lncRNA downstream 39692 10711712 ~ 10774796 (+) True G48648
TU65006 lncRNA downstream 183482 10855502 ~ 10899132 (+) True G48670
TU65008 lncRNA downstream 195838 10867858 ~ 10871077 (+) True G48671
TU65017 lncRNA downstream 235340 10907360 ~ 10960482 (+) True G48680
TU65016 lncRNA downstream 238123 10910143 ~ 10912072 (+) True G48679
XM_039800732.1 mRNA upstream 54078 10574601 ~ 10583529 (+) True LOC120559192
XM_039800729.1 mRNA upstream 97255 10530663 ~ 10540352 (+) True LOC120559190
XM_039799829.1 mRNA upstream 111273 10326748 ~ 10526334 (+) True magi3a
XM_039799395.1 mRNA downstream 86377 10758397 ~ 10811552 (+) True LOC120558407
XM_039799516.1 mRNA downstream 645410 11317430 ~ 11328619 (+) True LOC120558497
XM_039799539.1 mRNA downstream 680594 11352614 ~ 11382149 (+) False rapgef3
XM_039799541.1 mRNA downstream 680594 11352614 ~ 11382149 (+) False rapgef3
XM_039799543.1 mRNA downstream 680636 11352656 ~ 11382149 (+) False rapgef3
TU64544 other upstream 1207660 9404224 ~ 9429947 (+) True G48347
XR_005639234.1 other upstream 1519406 8990487 ~ 9118201 (+) False LOC120559255
TU64306 other upstream 1911055 8716767 ~ 8726552 (+) True G48162
TU64206 other upstream 1949643 8681925 ~ 8687964 (+) True G48077
TU65107 other downstream 500575 11172595 ~ 11173654 (+) True G48752
TU65120 other downstream 642642 11314662 ~ 11315992 (+) True G48765
TU65506 other downstream 1420759 12092779 ~ 12096837 (+) False LOC120559364
XR_005639365.1 other downstream 1510189 12182209 ~ 12210409 (+) False nol4la
unassigned_transcript_224 other downstream 1551547 12223567 ~ 12223638 (+) True trnae-cuc_14

Expression Profile