RNA id: TU64973


Basic Information

Item Value
RNA id TU64973
length 3559
lncRNA type sense_over
GC content 0.42
exon number 7
gene id G48640
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 10614031 ~ 10750428 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTTAGGACAATTGTAttaatttctattttaaaatgttctcttCCTGCAGTGGTTCGATGTGAGGATCCTAATATAGCCAATGGTCACCAGGTTGAGGGTTCTCGACCCCCTCATGGATACAGGTCTACGGTGACATACAAGTGCAAATCTGGGTATGTTATGGAAGGAGGACGCACACTGACATGTGGAATAGATAGTCAGTGGTTACCTGGACTTCCAACATGTCAAAGAGTAACACCCCCACCTaaacccaccaccaccaccaccaccaccaccaccacaacagATTCTCCCCCAGAGACACCAGACAATAACAGACAGACGTTGGCTATAGGCTTGGGTGTAACTGTTGTTGCCCTCGTTGCTATCGTTTCTGGAGCCCTGGTATACAAGcacaaaaaaagCTCCGGGAAAGGTTCTCCTGACAATGTGGctccaaaagagagagaggatgtaGAACTCCCGTTACAAGGATAGACTGCCAAGCACAGCTGAACTCATTTATGCCAAATAAATGGATGtAAGTAAAAAGGGCTGGTTGAGAAGAGGACTTCTTTGACTGACCTGTGCTGTCCCTGTGCAGGCTCAGGGAAatcatcacccccccccccgaacAACAGTCTTAAGCTCAATCCTTAGCTCGTGCTTCAAGCGGCTCCTCCAATAAATCGACAATATTTCCATCTTTGACTCACTACTACTTTTCCCCTTCTACATAATtccattaaaggggtgatagaatgcaaaaccgattttactgAAATTTACGTTGAATAACGACATAcgtagaagctcaaaatcccattgacacccctttactatgaaaatctcatattttgaaactgccgctgaaaacgggcgaatctcaacaaagctggaagttgacgtcaacctcccaagacctgtaactttgtcacgcccatgggtgtattaagagaacggtcacgccccaacatttacataggctacacaactgacctgagatcaggtagtcttctgaatctagctaggtcacgcaaatctctgctattccattacaaaattcaacaagtaacaagctcgctgaccgcgctctcactctcacacacgggccatttagctagcagtaagaggggagttgcagtccctggagctctgtcagggcagcggcatttggttgtccattagcccaaaagacggtgactttgcgcgggtatggagtgcagtgggctgccagtcgtgacggagctccaagtacctcatagcaggccggggtctgtgaaggaaggcaggccgggcggcgaggcagcaacacaggcagcaccggcgctgaaatCCGATCCACAGTCTTatcaaatttgcaattggccatcaattttcgtaaaatggcccatatttgagctttatatagttgatttttcgcttaaaaaagtctcagaagtgaatttaataacgaaatagcccaacaaacaatgtataactgcagtgtctgaaatatgagacctgctgtcgagtctcccatgtgtttctatgtagtttgatcaaaccaatcagcgcgcagctcattcaaaatattcatgagcataccatatttggaagaaaagctcttgttccaaatagagccgtattcacagggtagttaagggcccaataaaatagcatttgggcaattttcatttcattcatcatttgttacataccccattaggagaccttaaggaacagtgtaaaataccctgtATAATCATTCAATCATccatttaaaggaacatgccgacttattgagactttagcttattcaccgtatgccccagagttagataaatcCATATactcttctcatctccgtgcgtgttttAACTCTCCGACGCCCCCAGCGCTGTacgggtgtacaaataacaaggtcatatgagacacagccgtcttctaaccgtatacatactgggaactatattctcagaaaggcgaagcactgctattCTGTGCtgctcaccacggggcttctcaggtgctgcaagcaaatCCGCCTAAGtagttagaagacggctgtgtctcatatgaccttgttatttgtacacgctgtgactatacaaatcacaacatgtaaataggaacattttggcgttattttgtcacttattcggagcagtaggttagttggagccggttacctacaggatctgtgctaacCAGGCTAGCTGTGGGAGCgtcagagttacaacacgcacggagatgagaagggtatgtatggacttatctaactctgggagacacggtgaataagctaaagtcccaataagtcagcgtgttcttTTAACTGATGTTTGGAATGCCTTCCATTTCTTTTTACAACATCACAGCAGAGTTTCCATGCCGCAATTATGAAGGAACGAGATTTCTTGTATATCAGAGgcttaaaggggctgtacttgaAATACCGAAACAACAGTGGGATAGGGTTGCCTCCACAAGGCTCTCACAGAATGTTCCCCAATGTCTACGTTTTTGTTATAAACAGTCAATTGAAACAAAGTCGGATAACAACACTCTACAGAGTgggacttcattctctgctaaGGACGCCATTACTCCCGCTATATCTTCACATAGCAAttatttgtttgctgctatattaatggTCTGAATGTCGAGTACGGCCCCTTTAAACCCCATGTTGATTTTAAACTTTTGCACTATAGCTTAGAGCACAGCTCAGCTTTCCCATTGGAGCTCAGTTACACTGATGGCTTGAAACAAGCAAAATCAGTAAGGAATGTTTGCATGCTTGACCCTAAATACAGCTGTAAGAATTTAATAGTTTTTGTATAAACTTTAGAAACTTTAAAAACGATCAAAGTATCACTTTCAGTTTGATGCTTAAGAACACAGTGAATTTGCCTCTATTTACTTCTATAAGAAATGTCACCATTTGTGTAACTGGAAtggatataataatacattgtgtaaatgagaggctCCTAGCCGATAAACCAGTCCTCCAGTCTTGTAAATAACAATGGGATCTGTGAAACAGTCCCAAGCATAGTGCCTAAATAAAAGGCATGTTCCATATGCCTTATTTAAAAAAGCCAAGTATTTTAGCTTGTTGTTTGTCAGTTTGTTAATAGAGGCTTAATGGTAGCCCTACCTTAACTGTGTATGCTTAATAATTGGTCATGTTTAATGGTATTTTGTGTGTTGCGTAGCTTCACCAAATTAAGTTAAAACAGTTTTCTCTGACAaggaaaaaattaaattaataattaaaagaaataattgATCAGGTATTGGTTTTGTAGACATCTCTCTTCTAGAGTGTCAGATTAATATGTGTATACCCCCACACTACTCTGAAGAAGATCCATACTTTAAGAGTATTAGGACACAGGTATTGTCTGTGGTTAAATAAAGATGTATAGACTGATTTCTGATTGACAATGTTGCACTTGCCTGGCTTTTTGTCTGTATTTGTTAAACTAAATTGTGTGTCAACATCTCAGTGAGTTTTATATTATGTTGaggcaagcttttattttgacatcactctttgtaattaattattgaaataaaacaactgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64943 lncRNA upstream 27664 10586159 ~ 10586543 (+) True G48639
XR_005639230.1 lncRNA upstream 53967 10544009 ~ 10560240 (+) True LOC120559193
TU64897 lncRNA upstream 71281 10511822 ~ 10542926 (+) True G48602
TU64888 lncRNA upstream 209448 10404052 ~ 10404759 (+) True G48594
TU64776 lncRNA upstream 463010 10149880 ~ 10151197 (+) False agmat
TU65006 lncRNA downstream 105074 10855502 ~ 10899132 (+) True G48670
TU65008 lncRNA downstream 117430 10867858 ~ 10871077 (+) True G48671
TU65017 lncRNA downstream 156932 10907360 ~ 10960482 (+) True G48680
TU65016 lncRNA downstream 159715 10910143 ~ 10912072 (+) True G48679
TU65110 lncRNA downstream 457859 11208287 ~ 11208634 (+) True G48755
XM_039800732.1 mRNA upstream 30678 10574601 ~ 10583529 (+) True LOC120559192
XM_039800729.1 mRNA upstream 73855 10530663 ~ 10540352 (+) True LOC120559190
XM_039799829.1 mRNA upstream 87873 10326748 ~ 10526334 (+) True magi3a
XM_039799395.1 mRNA downstream 7969 10758397 ~ 10811552 (+) True LOC120558407
XM_039799516.1 mRNA downstream 567002 11317430 ~ 11328619 (+) True LOC120558497
XM_039799539.1 mRNA downstream 602186 11352614 ~ 11382149 (+) False rapgef3
XM_039799541.1 mRNA downstream 602186 11352614 ~ 11382149 (+) False rapgef3
XM_039799543.1 mRNA downstream 602228 11352656 ~ 11382149 (+) False rapgef3
TU64544 other upstream 1184260 9404224 ~ 9429947 (+) True G48347
XR_005639234.1 other upstream 1496006 8990487 ~ 9118201 (+) False LOC120559255
TU64306 other upstream 1887655 8716767 ~ 8726552 (+) True G48162
TU64206 other upstream 1926243 8681925 ~ 8687964 (+) True G48077
TU65107 other downstream 422167 11172595 ~ 11173654 (+) True G48752
TU65120 other downstream 564234 11314662 ~ 11315992 (+) True G48765
TU65506 other downstream 1342351 12092779 ~ 12096837 (+) False LOC120559364
XR_005639365.1 other downstream 1431781 12182209 ~ 12210409 (+) False nol4la
unassigned_transcript_224 other downstream 1473139 12223567 ~ 12223638 (+) True trnae-cuc_14

Expression Profile