RNA id: TU65006


Basic Information

Item Value
RNA id TU65006
length 1591
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G48670
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 10855502 ~ 10899132 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGGTTCAGTGGTTCTGCAGATACCACTCAGAAGAACGCAAACAGGCTCTCCCTGGGGATGTCAGCACGCGTTGCAGCACCATTCACTGTATGATGAAAAATAAGTCATTGAAAGCTTTATCGTCAGCAGGTCCTGAGAAAAACCCACCACACTACCAAGTGAATTAAAATGTTTCccttgtggccgggttggctcagtggtagagcaggcgcacatatactgagacgtttatgcctcgacgcagaggtccagggttcgaatccgacctgtgacgatttcctgcatgtcttccccctctctctcccctttctcacctagctgtcctgtcaaaaattaaaggccgAAAAGCCCCCCCAAAGCCCAGCCGTTTCTGGCATCGCAGTGTTGGACAAAGTCAGAGAAAAGTACATATTGTGTACACTGTAATTTTggttgtatgtacagtatgtatgactGCTGAATATGGAACTGGCCAACCAATTCACCTATAACTTTTTGACATGTTATATTTATTAACTGTTATTGCACTTGCAATCACTACCATACTACCATTCGTCTTAGATGTTGCTGGCTGTGATTGCTGGGACGTGTACCGGCTCTTACCTTTCACAAGAAGTTGAACGTAATACCTGCTTTATCTCTGTGAAAAGAGAAATAGCAATATTTATCTGGAAGGCAAGCAATATCAATTTTCAAAGCTTccgtttattgttttgttcTATTCGCCAATATATTTATGTCCTTAGAGCCCAGTCTATCACACTATTAACTAACAACATTTTCTCTTACTGTGCCACTGAAGCAGTCAGCAAATCAATCGGTCAGCCGACTGCAGTGGGTTTGATGTTTTGATGTCGGGCCAAAGCACAACCGATGGATGTGCCAATCCTCCTGTTCAAAATGTTGACACAAAGCACAAGATGAATATAAACATGCATTCCACCCGCTCTCACGTAGTTACTGCTGTTTTACCCTCACTCTGTAGTGTTCACTTAAAATATCGGACTCATTCCAAGAACACGGTTTCTGACAACTTCATGCTCTGTAAAAGATCTTAGCCTGCACAAATACACCACCCTGTGTTAAGTAAGAGTATTGCTTTTGGAGGGTTTGTTTACATCAGGAATAAAAAGTGCGTATGACATAGAAACctctggatggatggatggagctgAGTCAAGGCACTGGCACAGCAGGCGCACGCACTTTGGCTTTCCAATTAATTCTAAAgacaaattaattaaatttgtCTTTAGAAAGAAtcaatagaagaaaaaaaatgtaaataaacttttttGAAGGAAAATCTATTTCTGCAAATGAACAATGGGGAAAACAATATTAGATCATTTTAACTTCAGGCCTATATGCAGCAAAATGCTGTTAAATGAATTGATAAGTAGTTTTACATTCCTTtatgttacaatttaaatacagTATCAGCTGGAAATGGCACTACGCACAGTATGACACactaacaggtgcaacaaaaCCAATCAAAGTCAGTGCAATGATTAAAAAGGTCCTGAGAAAGTAGCTACAATATAGTTTTTctcatgatttctttttttgagaaaacaAAGAGAAATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64982 lncRNA upstream 80706 10711712 ~ 10774796 (+) True G48648
TU64973 lncRNA upstream 105074 10614207 ~ 10750428 (+) True G48640
TU64954 lncRNA upstream 152121 10623891 ~ 10703381 (+) False G48640
TU64968 lncRNA upstream 152121 10623891 ~ 10703381 (+) False G48640
TU64965 lncRNA upstream 183482 10637607 ~ 10672020 (+) False G48640
TU65017 lncRNA downstream 8228 10907360 ~ 10960482 (+) True G48680
TU65016 lncRNA downstream 11011 10910143 ~ 10912072 (+) True G48679
TU65110 lncRNA downstream 309155 11208287 ~ 11208634 (+) True G48755
TU65118 lncRNA downstream 330875 11230007 ~ 11230366 (+) True G48763
TU65171 lncRNA downstream 535912 11435044 ~ 11456874 (+) False G48803
XM_039799395.1 mRNA upstream 43950 10758397 ~ 10811552 (+) True LOC120558407
XM_039799394.1 mRNA upstream 107949 10593784 ~ 10747553 (+) True LOC120558406
XM_039800732.1 mRNA upstream 271973 10574601 ~ 10583529 (+) True LOC120559192
XM_039800729.1 mRNA upstream 315150 10530663 ~ 10540352 (+) True LOC120559190
XM_039799829.1 mRNA upstream 329168 10326748 ~ 10526334 (+) True magi3a
XM_039799516.1 mRNA downstream 418298 11317430 ~ 11328619 (+) True LOC120558497
XM_039799539.1 mRNA downstream 453482 11352614 ~ 11382149 (+) False rapgef3
XM_039799541.1 mRNA downstream 453482 11352614 ~ 11382149 (+) False rapgef3
XM_039799543.1 mRNA downstream 453524 11352656 ~ 11382149 (+) False rapgef3
XM_039799546.1 mRNA downstream 453524 11352656 ~ 11382149 (+) False rapgef3
TU64964 other upstream 152121 10614031 ~ 10703381 (+) False G48640
TU64544 other upstream 1425555 9404224 ~ 9429947 (+) True G48347
XR_005639234.1 other upstream 1737301 8990487 ~ 9118201 (+) False LOC120559255
TU64306 other upstream 2128950 8716767 ~ 8726552 (+) True G48162
TU64207 other upstream 2167538 8684798 ~ 8687964 (+) False G48077
TU65107 other downstream 273463 11172595 ~ 11173654 (+) True G48752
TU65120 other downstream 415530 11314662 ~ 11315992 (+) True G48765
TU65506 other downstream 1193647 12092779 ~ 12096837 (+) False LOC120559364
XR_005639365.1 other downstream 1283077 12182209 ~ 12210409 (+) False nol4la
unassigned_transcript_224 other downstream 1324435 12223567 ~ 12223638 (+) True trnae-cuc_14

Expression Profile