RNA id: TU65016


Basic Information

Item Value
RNA id TU65016
length 1910
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G48679
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 10910143 ~ 10912072 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGGGGGAGATCTCCCATCAGCTGACAACAAAAGCTGGCGTGACTCATTAGCACTTGATAGAATCAAAGATGGACCCTTGGAGCACTTCTGATGTGCGACAGCATGCATGCAAAGTACACACAAAGTGGATCAAGTTCCCAAATAGATACAAACTGTGGTTATATGGTGGAGATTCTTAGCTTAGACACCAATTGCTCTTGTTTGGTCTCTACTAAGtgcatctgcacacactgcgTAGGTATGAGCAGACACAATGCAGACGATACACACTCTCCtctagcagaaaaaaaaaaaagtggtttagGGTAAATAATGTTCGGGACGTGGTTGGACGGGCTCGGGCCAGGACGGACAAATGGAGTCGTTCGCTCGACGAGCTACTGCAAATACCTACGGAGCTCAGTTCAACTGAGCCCCTTTTCTGTTTGCAAAACTCAAATAGACATACAAACggacaaacaaattaaaaacatttgtacATTCACATAAACAGATTGGCAAGTATCAACCGGTACATACACAGATGACCTAACtgctggaaaaataaaaaaacaacaaccttggACACCAGATTGATGCTGATTCATGGTAATCTCCTAAATACACTATAGGCCTTCCTCTCCGTCATCCTCAGTTTAGGTGCAAGCGTGCTGGCTGAACTGTTGACCATCCATCGACTCTTAGATGACGAGcacaagtttttttgttttcttttaaggTTTCCTGTACACTTCTGATTGGAGGAAGAGCAGAGGTTATGTCCGTGTCACGCGGAGCGTCAGTCCGAGGAGGGAAAGGAGCGAGAGAAGACATGGAGCGTGGCCTGTTTCACCACCGCGCTGCCCGTCTCTTTACGTCTTTGCACGACAACACTTGCGGGAGACCGGGAGGCGGATGTTTTCAACTGCAACTGATAATATTCAAAATgtacaagtaaaaaaataaaaatctgggAAATCTGAACGCAAACTCAGCAGCAGTCCGACATGAGATCTGCTCCTCTGCTTCTCGccgtcattttcttttctttttttttgtctccattTCACACTCAGGTGTCAGCTTCTGACTGAGTGGAGAATAAAATCTGTTCCTCCGTTTGCTCTCACGATTTGGCAGAGTCttactcagacacacacacacacacacacaatttcctGTCAAACTGAGAGAAAATATACTTTGCGAAAAAAAAAGGAAcggacaaaaataaataaatacacgcCATGTTCTTGCCTTCTCTGCTGATGGTCCTTCCTCATGCCAATTATCAGCTCCAGCTGCAGGGCCTCTATCTCAGTCTGTGGGCCCTTAGCTGGTGCCATCATGGAAGGAAGGGAAAGAATTACAAACTAAAGCTGTTGGATGTCTGTCCGACAGTGAATACAGAGAGGTCCCAGGTCTGGTTTTCGTGGCGGTAGCTCCCACGATGAGAGGTAAGTAATGCGGGACCTTCGTGCGAGGGCCCTGTAGAGGCTTGTGGTCCTGTCTCTCTCGGTGTTGGCTCTCTCTTTGAGTGGCGGTCGCTCTCAGCTCTCCAGGGACATGGCCGCGATCAGCTGCTCCACCTTGTAGGACAACCTCTGCTTCCTCGCCTGTTCGTCCTGCTCCAGGGCGGCCGTGATCTGTGCAGGACAAGGAAAAACTTTGGTCAAATACCagccagaaaaaaaatgtaattaaaaaaatacatattccGACTGCATCCTTGGTGGTTGTGATACAATAATAGAATTACATCTGACAACATTTCGTAGAGAAATGCGTATTTCGTTATGGAGCGGAGCCTGTTTTCAGTGATTGAAGgaatattcagatcctttacttaagtaaaagtactaataccacactgtaaaaaattcTCTGTCACAAGTAAAATTGAATtaattacttaagtaaaagtatttaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65006 lncRNA upstream 11011 10855502 ~ 10899132 (+) True G48670
TU65008 lncRNA upstream 39066 10867858 ~ 10871077 (+) True G48671
TU64982 lncRNA upstream 135347 10711712 ~ 10774796 (+) True G48648
TU64968 lncRNA upstream 206762 10623891 ~ 10703381 (+) False G48640
TU65110 lncRNA downstream 296215 11208287 ~ 11208634 (+) True G48755
TU65118 lncRNA downstream 317935 11230007 ~ 11230366 (+) True G48763
TU65171 lncRNA downstream 522972 11435044 ~ 11456874 (+) False G48803
TU65172 lncRNA downstream 526200 11438272 ~ 11438557 (+) True G48804
TU65170 lncRNA downstream 542517 11454589 ~ 11456874 (+) True G48803
XM_039799395.1 mRNA upstream 98591 10758397 ~ 10811552 (+) True LOC120558407
XM_039799394.1 mRNA upstream 162590 10593784 ~ 10747553 (+) True LOC120558406
XM_039800732.1 mRNA upstream 326614 10574601 ~ 10583529 (+) True LOC120559192
XM_039800729.1 mRNA upstream 369791 10530663 ~ 10540352 (+) True LOC120559190
XM_039799831.1 mRNA upstream 387045 10326748 ~ 10523098 (+) False magi3a
XM_039799516.1 mRNA downstream 405358 11317430 ~ 11328619 (+) True LOC120558497
XM_039799539.1 mRNA downstream 440542 11352614 ~ 11382149 (+) False rapgef3
XM_039799541.1 mRNA downstream 440542 11352614 ~ 11382149 (+) False rapgef3
XM_039799543.1 mRNA downstream 440584 11352656 ~ 11382149 (+) False rapgef3
XM_039799546.1 mRNA downstream 440584 11352656 ~ 11382149 (+) False rapgef3
TU64964 other upstream 206762 10614031 ~ 10703381 (+) False G48640
TU64544 other upstream 1480196 9404224 ~ 9429947 (+) True G48347
XR_005639234.1 other upstream 1791942 8990487 ~ 9118201 (+) False LOC120559255
TU64306 other upstream 2183591 8716767 ~ 8726552 (+) True G48162
TU64207 other upstream 2222179 8684798 ~ 8687964 (+) False G48077
TU65107 other downstream 260523 11172595 ~ 11173654 (+) True G48752
TU65120 other downstream 402590 11314662 ~ 11315992 (+) True G48765
TU65506 other downstream 1180707 12092779 ~ 12096837 (+) False LOC120559364
XR_005639365.1 other downstream 1270137 12182209 ~ 12210409 (+) False nol4la
unassigned_transcript_224 other downstream 1311495 12223567 ~ 12223638 (+) True trnae-cuc_14

Expression Profile