RNA id: TU65391


Basic Information

Item Value
RNA id TU65391
length 1359
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id LOC120559701
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 11860102 ~ 11862940 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGGAAAATGCTGGtcacacaacattgacatataatCACATTATAAAGTTGGTTTTCCAACACATGTTTGCTTATagttacacatccagcagttacagagcaacattatgaTTTATTTGAAGTCGGGATTCTGGCCATTGGATGAATGGTCTCCAGGTCTCCAAACAGACTCTCTAGGATGGCATTAGCAATAGGGAGCATCATGGCTGTGGTGGCGGTGTTGCTGAGCCACATGGACAGGAAGGACGAGTGAGGACCTTTAGGGCGATTCTGCGATGCAGGCCCCACTCCTCGATGGACGACGCCATCACAAGACCGCTGAGGAAGAGAAAATTGGTTTCCAGGAAGTACTGAGGACAGACTGTTTTGGATGGAAGAATTCCCAGTGTTGGGAAGAGGCAGACCGGAAGCATTGCCGTGACGGCCAGAGGAAGGGCCTCTGTGCACCAAAACATAGCCATCAGCACCACCACATAAAGACATTTTCCCTCCTAAAAGATAAGCAACATGTGGTCATTAATGTTTAGCCaactttaaaaagaagaaaaagatgtgacaggggaaaaaaaggaagaaatacAGTGActttgtcagagagagagaaattgcaTTCATGTGCAACTGTGTGCATAAGAGGCATGCTTCTGTATAGTTAAATACAATGCATAAGGAATAGTGTACAGTTTGTGGCATAAATATAATTGcagggggtggcagtagctcagtcagtagggagttagGGAGTtaggttgggaaccggagggttgctggttcaagtccccatacggaccaaagtatggtggtggattggtagctggagaggtgccagttcacctcctgggcactgccaaggtgctcttgagcaaggcaccgaacccccaactgcacagggcgcctttccatgggcagctccctcactctgacatctctccattagtgcacgtataggtactgagcatgtgtgtgtgtaattcaggccagtgtgtaatgtgtgtaataacaacagagtgaaaacattgtaatttccccttgtgggattaataaagtatacattacattacaaatcAATACAGGTGCTGGTTTAATGTAATATAAACataataaatgaatatattTTGTAGATTTAGGTTATTGAGATGGGGCTGCAGCTAACATAGTgtagtattttttattataagtAGGCCTATACTTCATAAttccactccactacatttaaaaaaggaaaatattgtacttttataTCTATTTGACACTTatagttacaaattactttttacataaaaacatgattGAAAAACATGATATGCTTTTTAGATATGATATGATGCAGTAGGCTACTAATTGAGTagtatacaaatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65263 lncRNA upstream 107017 11752998 ~ 11753237 (+) True G48876
TU65230 lncRNA upstream 139337 11712807 ~ 11720917 (+) True LOC120559500
XR_005639299.1 lncRNA upstream 143678 11712804 ~ 11716576 (+) False LOC120559500
TU65239 lncRNA upstream 160298 11699026 ~ 11699956 (+) True G48854
TU65245 lncRNA upstream 256270 11603719 ~ 11603984 (+) True G48860
TU65407 lncRNA downstream 19023 11881963 ~ 11903479 (+) True G48980
TU65413 lncRNA downstream 44839 11907779 ~ 11907872 (+) True G48986
TU65403 lncRNA downstream 90234 11953174 ~ 11982735 (+) True G48978
TU65499 lncRNA downstream 227315 12090255 ~ 12090723 (+) False xkr5l
TU65536 lncRNA downstream 279202 12142142 ~ 12142527 (+) True G49086
XM_039800930.1 mRNA upstream 43700 11813252 ~ 11816554 (+) True LOC120559303
XM_039800929.1 mRNA upstream 48443 11807712 ~ 11811811 (+) True pym1
XM_039801589.1 mRNA upstream 82419 11760824 ~ 11777835 (+) True pan2
XM_039801590.1 mRNA upstream 82420 11760824 ~ 11777834 (+) False pan2
XM_039801329.1 mRNA upstream 116616 11737336 ~ 11743638 (+) False nemp1
XM_039800846.1 mRNA downstream 106599 11969539 ~ 11971359 (+) True cebpb
XM_039800839.1 mRNA downstream 117844 11980784 ~ 12009924 (+) False klhl12
XM_039800841.1 mRNA downstream 136596 11999536 ~ 12009924 (+) False klhl12
XM_039800840.1 mRNA downstream 136626 11999566 ~ 12006706 (+) False klhl12
XM_039800836.1 mRNA downstream 136630 11999570 ~ 12009924 (+) True klhl12
TU65120 other upstream 544262 11314662 ~ 11315992 (+) True G48765
TU65107 other upstream 686600 11172595 ~ 11173654 (+) True G48752
TU64964 other upstream 1156873 10614031 ~ 10703381 (+) False G48640
TU64544 other upstream 2430307 9404224 ~ 9429947 (+) True G48347
XR_005639234.1 other upstream 2742053 8990487 ~ 9118201 (+) False LOC120559255
TU65506 other downstream 229839 12092779 ~ 12096837 (+) False LOC120559364
XR_005639365.1 other downstream 319269 12182209 ~ 12210409 (+) False nol4la
unassigned_transcript_224 other downstream 360627 12223567 ~ 12223638 (+) True trnae-cuc_14
TU65687 other downstream 589595 12452535 ~ 12458439 (+) True G49209
XR_005639089.1 other downstream 789670 12652610 ~ 12658308 (+) False LOC120558314

Expression Profile