RNA id: TU65413


Basic Information

Item Value
RNA id TU65413
length 94
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G48986
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 11907779 ~ 11907872 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCAGATGAAGTGGCACAGTTTATGTTTGCCTTGTACAGGCGCTGCCTCCCTCATGTCATCTCTGTTGCCTCAAACAGCCTCAAACGTTTCTGTC

Function

GO:

id name namespace
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65407 lncRNA upstream 4300 11881963 ~ 11903479 (+) True G48980
TU65391 lncRNA upstream 44839 11860254 ~ 11862940 (+) False LOC120559701
TU65392 lncRNA upstream 44839 11860254 ~ 11862940 (+) True LOC120559701
XR_005639351.1 lncRNA upstream 45812 11860102 ~ 11861967 (+) False LOC120559701
TU65263 lncRNA upstream 154542 11752998 ~ 11753237 (+) True G48876
TU65403 lncRNA downstream 45302 11953174 ~ 11982735 (+) True G48978
TU65499 lncRNA downstream 182383 12090255 ~ 12090723 (+) False xkr5l
TU65536 lncRNA downstream 234270 12142142 ~ 12142527 (+) True G49086
TU65544 lncRNA downstream 238332 12146204 ~ 12146526 (+) True G49094
TU65559 lncRNA downstream 303872 12211744 ~ 12212515 (+) True G49105
XM_039800930.1 mRNA upstream 91225 11813252 ~ 11816554 (+) True LOC120559303
XM_039800929.1 mRNA upstream 95968 11807712 ~ 11811811 (+) True pym1
XM_039801589.1 mRNA upstream 129944 11760824 ~ 11777835 (+) True pan2
XM_039801590.1 mRNA upstream 129945 11760824 ~ 11777834 (+) False pan2
XM_039801329.1 mRNA upstream 164141 11737336 ~ 11743638 (+) False nemp1
XM_039800846.1 mRNA downstream 61667 11969539 ~ 11971359 (+) True cebpb
XM_039800839.1 mRNA downstream 72912 11980784 ~ 12009924 (+) False klhl12
XM_039800841.1 mRNA downstream 91664 11999536 ~ 12009924 (+) False klhl12
XM_039800840.1 mRNA downstream 91694 11999566 ~ 12006706 (+) False klhl12
XM_039800836.1 mRNA downstream 91698 11999570 ~ 12009924 (+) True klhl12
TU65120 other upstream 591787 11314662 ~ 11315992 (+) True G48765
TU65107 other upstream 734125 11172595 ~ 11173654 (+) True G48752
TU64964 other upstream 1204398 10614031 ~ 10703381 (+) False G48640
TU64544 other upstream 2477832 9404224 ~ 9429947 (+) True G48347
XR_005639234.1 other upstream 2789578 8990487 ~ 9118201 (+) False LOC120559255
TU65506 other downstream 184907 12092779 ~ 12096837 (+) False LOC120559364
XR_005639365.1 other downstream 274337 12182209 ~ 12210409 (+) False nol4la
unassigned_transcript_224 other downstream 315695 12223567 ~ 12223638 (+) True trnae-cuc_14
TU65687 other downstream 544663 12452535 ~ 12458439 (+) True G49209
XR_005639089.1 other downstream 744738 12652610 ~ 12658308 (+) False LOC120558314

Expression Profile