RNA id: XM_039801027.1


Basic Information

Item Value
RNA id XM_039801027.1
length 3066
RNA type mRNA
GC content 0.45
exon number 9
gene id LOC120559364
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 12092779 ~ 12103899 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTGCGTTCAACTGCCACATTTCAAACTAGAATGGCGACCGCTGTTTGCGGTTTGCAGTCCACCGGCAGTAACGGTAAGTCAgttaaaacacacagagagcaccgGAGGAAAACGAAAGACTCCAGGAGGAGACAGGCGGCTTTGTTGTTCCTTAATAATATCTCACTCGACGGACGACCCCAGTGTCAGCCTAGCGATGAAAACGACGACCAAAAAGCCGCCGAGGAGCAACGACTCAGGGACAGAGACGGCGGCGCAACGGTCGTGCCCCTGCCGTCGGCATGTCGCCAAGAACCGGTCGCCCAGGTGACAGAACCCGCGGCGTCAGGTAGTGGCTCGTCCTCCAGTTTTCCAGGGGTAGTCAGTCCTACCCGACCTTTGGCAATATCTCCTGGACCTGCTGGGGCAAACGAGGTATTTTTGGAGGGTGGCACTGCGGCCGTTACGCTAACCCCGGACACCCCTATGTCTCCTGTTCCCTCCGGACACCAGCCCTGCTCCCGTGTCAGGTCAACGCCCGCCGCTCTGAGCCCGGTCCCGACCGGTAATTCTATGGATTCACGGCAGAGGTTAAGGAATGTCTCTGGTTCTCCTGGACCTAAAGTGCCAAAGAAAGTCCACTTCATCAAAAGTATGCGGCAGTACGATACCAGGGGATCTAGGATCGTGCTGATTTGTGCCAAGCGGTCGCTATATGCTGCTTTCTCAGTGCTGCCCTATGGAGAGAGGGCTCACCTCAGTGATCCTAAGCTGGAGACTCAGAGACAGAGGCTGTCTTCTGTGGTGGCTGCTGACCTGCTTCCTTCCCTGGAAGGTGTGGAGCTTGCAGACTATGGAAAGGTAAATGATGTCTGTCTCCTTTATCCGACCAATGCCTTGGTGAGGCAGAAGAGTGGCGGCGCTCCAGAGAACGGTACGGCTCTCACCCCTCAGTCCCGTTTCCGTGGCAACGGGCAGAGGAACTTTACCCCGGCTCGTGTGAACAGCAGCGTGGCACAGGACCAATGTATAGAGGAGGTGGTAGAGTACGATCCTAACCTGCTCAGTGACCCCCAGTGGCCCTGTGGGAGACATAAGAGGGTTCTGATATTTGCATCATACGTGACGACTGTCGTTGAGTACGTGAAACCATCTGATCTGAAGAAGGACATGAATGAGACTTTCAAGGAGAAGTTTCCTCACATCAAGCTAACTTTGAGCAAGATAAGAAGCCTGAAGAGGGAGATGGGGGCCATGAGCGAAGACTGCGGTCTACAGCCGGTCACCATAGCGATGGCTTTTGTTTACTTTGAGAAGCTGGTGCTGAAGGGACGCCTCAACAAGCACAACAGGAAGCTGGTGGCGGCGGCGTGCGTGCTGCTGGCAGCAAAGATCAGCAGCGATCTGCGGAAGCCAGAAGTCAAACAACTCATCGACAAGCTGGAAGAGCGTTTCCGTATCAACAGACGGGAGTTGATTCCTCTGGAGTTCCCGGTGCTGGTTGCCTTGGAGATGGGACTTTACCTCCCCGAGAGCAAAGTCATGCCGCACTACCGCAGGCTGGTGCAGCAGGGTTAGACTGACATTTTCTGGTTTCATTAATAACATCAGCAAGTGGGAGTGTGGTAAGGTAAAGGACTGTGTGTTTATACACTGTGGTATTGGAAACAAATAATTCTGGTAGTATTTATTTTCAGTCAGTTGTGACTTAAGTCGCTCACTGTATATTAAGAATAACTAGTTTACACTCCCATATTTTAAGACTTAATggcatgtgtgtctctctgaatgtgtttttgtaCGTGTGACGTTCTGATGTCGATGCAGTCATGAACTCTATGTTAGAGATGTTCAATGAGCACGTtaattgtgcttttattttggttttctgTGACCGATTTCTTTTGGTACGTCCTAGTATTCTATTTAAATGAAACCTGCACTGTGATGTTTGTGGAAGACGTTTCTCCTGCACCTTTCTTACTACTATACACAGTCTGTATTCTATTTATTATGAATGACAAAGAACCATACTGTTGATTTTTGTAAATGCCTTTTTAAACCCACTGTGACATTGAAGTGTTTTTAGCCATTAGACAAATACATGATACTCtagattggtggaaaatgtgatttttagATCAGATTAGAGAAGGATGGAAGTGACCTTTCTAATTTAGGTTCTTTGTTTCtctccaaaaaataaaataatccagccacatatatatatttaacttgtgaatagaaagaaaatattggATCAGATTCTTGTGGCAGCTGTGTGTCCAGACAGAAACAGGATTGTGATGGCATATTATTTATagtaaatgtgttttgttttttatcttttatgtcGTTAACCGgggatatgtttttatttaaaaaacaaaacaaaacgctgcACTGGAATTTATTCCTAGTCAGGCTAGTTGTTGTCTTTTTCAGTTCTCAGGaatttttctttctcttatcTTTCAGTGGCTTATAAAATCTAATCCAAAGAGATATTTAAAAGTTCTTACGTAGCTATCACCTGTAGTCCCATTGTAAGTCAAAGGAAGGTAACCGATTGTGCTTTCACAGATAACAAGTACCAGACAGTATTAACCTGACTGTAGTATTTGTTGTGTAGTAACTCTTCTGATTTAGGCGTACaaatatggagagaaaaaagtgcCTGAAACTACAGTGGCAGCGAAATGGTTAACCATCTTGTCATAAGTGATATTTAATGTTGACTTTTCTGAGTCTTGCTGCTGTAGAGATTTTTTAAATGTCGAAATTGTTCTTGTCTGGGAAACGTaataaaacagtttattgtctgCAGTTATGACCAATGTATTATGATAAAAATCCACTTGTATTGTTGATGTCAAATGGGtaaatattcagttttttttttcatattgtaaaatgaatgtttttcAAATATATGTTCAGACACTGAAaagtcatgttttgtttttttgactcAACACAATTTATATGACGCCGTTTCATCTCCTCAGAGCGGTATCAGTAAGTGAAGTGAAGCAAGTGAAGTAATCGGTCACAAAACTGGAGAATAAACATGACAGTAGAGCGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65499 lncRNA upstream 2098 12090255 ~ 12090723 (+) False xkr5l
TU65403 lncRNA upstream 110086 11953174 ~ 11982735 (+) True G48978
TU65413 lncRNA upstream 184949 11907779 ~ 11907872 (+) True G48986
TU65407 lncRNA upstream 189342 11881963 ~ 11903479 (+) True G48980
TU65391 lncRNA upstream 229881 11860254 ~ 11862940 (+) False LOC120559701
TU65536 lncRNA downstream 38243 12142142 ~ 12142527 (+) True G49086
TU65544 lncRNA downstream 42305 12146204 ~ 12146526 (+) True G49094
TU65559 lncRNA downstream 107845 12211744 ~ 12212515 (+) True G49105
TU65564 lncRNA downstream 116114 12220013 ~ 12223054 (+) True G49106
TU65594 lncRNA downstream 148544 12252443 ~ 12253795 (+) False LOC120559657
XM_039799251.1 mRNA upstream 2048 12084452 ~ 12090773 (+) True xkr5l
XM_039799949.1 mRNA upstream 9979 12068413 ~ 12082842 (+) True rap1aa
XM_039799947.1 mRNA upstream 29558 12043329 ~ 12063263 (+) True kdm5bb
XM_039799948.1 mRNA upstream 30545 12043095 ~ 12062276 (+) False kdm5bb
XM_039800844.1 mRNA upstream 68874 12017664 ~ 12023947 (+) True tuba5
XM_039799909.1 mRNA downstream 25937 12129836 ~ 12141802 (+) True LOC120558724
XM_039801835.1 mRNA downstream 78310 12182209 ~ 12210409 (+) True nol4la
XM_039801555.1 mRNA downstream 137147 12241046 ~ 12243801 (+) True LOC120559656
XM_039801556.1 mRNA downstream 137147 12241046 ~ 12243801 (+) False LOC120559656
XM_039801557.1 mRNA downstream 141746 12245645 ~ 12254060 (+) True LOC120559657
TU65120 other upstream 776829 11314662 ~ 11315992 (+) True G48765
TU65107 other upstream 919167 11172595 ~ 11173654 (+) True G48752
TU64964 other upstream 1389440 10614031 ~ 10703381 (+) False G48640
TU64544 other upstream 2662874 9404224 ~ 9429947 (+) True G48347
XR_005639234.1 other upstream 2974620 8990487 ~ 9118201 (+) False LOC120559255
XR_005639365.1 other downstream 78310 12182209 ~ 12210409 (+) False nol4la
unassigned_transcript_224 other downstream 119668 12223567 ~ 12223638 (+) True trnae-cuc_14
TU65687 other downstream 348636 12452535 ~ 12458439 (+) True G49209
XR_005639089.1 other downstream 548711 12652610 ~ 12658308 (+) False LOC120558314
XR_005639216.1 other downstream 756822 12860721 ~ 12884287 (+) False LOC120559134

Expression Profile