RNA id: XM_039801557.1


Basic Information

Item Value
RNA id XM_039801557.1
length 3817
RNA type mRNA
GC content 0.42
exon number 13
gene id LOC120559657
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 12245645 ~ 12254060 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGCCAGTGGTGTCCCAATGGCTGACAGACCCACATCAGGAGATGGCTGGAATTACTTAAAAGGTTCTCTACTGGATGTTAAGGTTTACACAGCAAATGAAAAAGAGTCTGAAGACCGGAATCTGTGGCCCAGACCACTGGCACGAAAATGGACCCTGATGCTGTTTATGGGCACCTGCCTCCTCTACTGTGCCAGGATGGCCATGCCAATCTGTGCAGTGTCATTGGCAACCTCTTTTCACTGGAGTAAGATCGATTCTGGGCTGGTTCTGGGTGGATTCTTTTGGGGTTACTGTTTCACACAGATCCTTGGAGGACATGCCAGTGACAGGATGGGAGGAGAGCGCGTCCTGTTCATCTCTGCAGTCTCGTGGGCTCTGATCACAGCTGGTACTCCTCTTCTGGCCCACTTAGGCTCTCACACCCTCGCCCTCTTGACTATGGCCCGATTCCTTATGGGACTGATGCAGGGAGTTTTTTTTCCGTCTTTGGCCAGCCTTTGCTCACAGCGTgtagtggaaggagagagagggtttTTAATGAGCACCATGAACAGCGGTTCACATCttggAACATTGCTAGCGGGTGGGATGGGGTCGCTGATGCTGGACTCGTACGGCTGGGAGAGCATGTTTTACACTATTGGTTTCCTGTCCGGACTCTGGGCACTTATTGTTTGGCTGTGTTTACTAAAAGGTTCAGAATTCCCCCCTAAGCAGATGGAAACAAGTAAAGACCCACAATGGAGTTTGTCAGGAACACGCTGGCTGAGTCTTTTAAAGAAGCCACCTGTCTGGGCCATGGTGTTTGCTCACATGTGCTTGTCCAGCTCTTTCTACAGTTTGCTGTCATGGTTGCCGACATACTTCAAAGAATCATTTCCACACGCCACGGTATGGGTGTATAATGTAATTCCATGGCTTGTTGCAATTGTATCAGCACTTGTTGGAGGATATATCTCAGATTTTCTCATCAACCAAGGATATAGTGTAGCATTGGTGAGAAAGATAATGCAGTTCTTTGCCATGGGTGTATCGAGTATATTTATTGTGCTTCTGTCTGGACCGGTCACATTTCCCACTGCTGTGATTTgcatctctgctgctgttggtcTATCCACCTTCGGCAGCAGTGGTGTGTCAGTGAATGTACAGGATCTCACCCCATCATGTGCTGGTGCCCTCTTTGGTTTTATGAATATGTTGGGTGCTTTCATGGGACTGGTGTCGGTCTCTGTATCAGGTTACCTGATTGAGGTCACGCTGTCGTGGGCCGCCATGTTCTCCCTCATCACTTTAGTAAATGTCACAGGCCTGGGGATTTTCCTCATCTTTGGAGATGCTCGTCGTGTCGACCTGGAAGATTACAGCCAGGTTATTGTGATTTGACCCAGTTTTGTTGCAAATAACAGTCTGTAGCTGATTTGTGAGACTGGACATTAAATTCACAACTGTAATCATCATTATCTCTAACCATGGTTTGCAGAAATCAGCGTTGAATTGGTGTCATTCTTTGCTGTAACTGGCTTTGAAGAATGCACACTACAGTATTAACATGATGTACTTGTTTGGGATGGTATAaagttgtgttttctttgtcattAATTTGACAAGCGGATCACATTCTTACTGATCATAAATGTGAAAGTACTGCAACATCCCCTTTTGAAAGTTAAGTCACTAAAATATTGTATGCATTTTTCTGCATTGTGTTTACTGTAAGTCACAGTGACTGCATTGTACAAATGTGTATGACTGTAGCAAAGTTTGATTTCCACAAAAATGTTTACATTACTAATGACTACATGCAGAAATGCAAGTTGCTGGTTTAGAGATTCACTTTAACCTAACTATATCAGGGGAAATTAAGTAAGTGTCCATTTGTCAGATTTGTTGACATGAGACTTTACTTACTTAAATCAGTTTGGACCTGTAGAGCACTACAAGATgaacagttcttttttttttttttttttttttaacactaaaCAATTCCAAGGTGCTGTATCTTTTATTcctcaaacaggagtaaataatGCAtgtgttggggactattttctgCTGCAGATTTGATGCTTTTATTATTTAAGTTGGAAGTTGGATGCACCCGTAAGTCGTATCCGCTAGCTCTGgtatatgtatttataattggattttaaatatttattaaactAAAATACACTTTGAAGAAAGTGTTCAGTGGTATTGTACAGTTTAGTTAAATTGTAAACTCACTTTTGTACATGTATTGTTTGATATAGCTAATTAAATGTTAATGACCCTGTTGAAAGGCTATCAGTtgtaaatgtctgtttttcttgctttttcacaaaaaacatgATCAAATGTTTGATTTTGTCCTCATTTAAGAATCTGTTTTGACAGTCACAAAAACattcgtttttttttctgtaagaaCAAGTGCATTTAGGAGTACGAATTAAGACCCCTTCACTTGTCACATGTGATGTGGCAGCCTTTTGCAAAAatcatttacattcatttttcCCCTCATCAATCCACACTCAATACTTCATAATGACTAAGGGAaaacttattacttttttttaaatttctaactaatttataagaaaaaaaaactcaaacatcACAATGACAGTATTCAGACCCTTAAATCAGTACTTAGTTGAAGCACCTCTGGCAGCCCCAAGTCTTCTATACGACACTACAAGTTGCACACCTGGATTGGGGGATTTTGTGCCAGTCTTCTCTGCAGATCTAATCAAGCTCTGTGAGGTCGGATGGGGAACATCAGTGGACACAGACATTTTCAGGTCTCTCCAGCGATGTTCGATTGAGTTCAAGTCCAGGCTGTCACTGGGCCACTCAAGGACATCCCTGTCCCTATGAGCCACTCCTGTGTTGTCTTGGTTGTGTGCTGCCTTAGGGTtattgtcctgttgaaaggtGAACCTTCAGCcaagtctgaggtcctgaggGCTCAGAATCAGGTTTTCATGAAGGATATCGGCGCTTTGTTTAGCTTTCCCTCATACCTTACCAGTCCCTGCCGCTGAAATACACCCCGacagcatgatgctgccaccaccatgcttCACTTTTGGGATGGTTTTTGTGACGAGCAGGTTACCTCCAGACATAATGCTTAGAATTGAGGCCAAACTAGAGAATCTTGTTTTTCACTCGTCTTTCAAGTGCTTTTTTACAACCTCAAAGTGTATCTTTCAGAGAGTCTTCTGTCTGGCCACTCTGCCATAAAGCCCAGATCAGTTTAGTGTTGCAGTGATAGTTGCCCATCTTGAACTTTCTCCATACAGGATATCTGGAGCTCAGCCAAAGTGACCATCATGTACAGTACTTTGTCACCTCTTTTAAGAAGGCCCTCCCCAATTGCTTAGTGTGGCCAGTTCTAGGAAAAGTCTTGGTTTTTCCAAACTTTTTCAATTTCAGAATGATTTTTATAGGCCACTGTGCTCTTGGTAACCTTCAATGTAGCAGATTGTTCATAGCCTTCCCCAGAGCTGCTCCTCAACATGACCCTTTCTCTAACCTCTGCAGGCAGCCCCTTCAGCCTCACGGATTGGTTTTTGCTCCGATATAAACTGTCAGCTGTGAGACCTTAATTAGACAGGTGTGTGCCTTTCCTAATCATGTCCAATCAATTGAATTCACCACAGGTGGACTCCAATCAAGGTGTAGAAACATCTCAAAGATCATCAGGAGAAATGGGAGGCACCTGAGCTACATTTGTGTCAAAGGGCAAAAAGACTGAATACCATGTCATTATTGATGTTtcaggtttttttctttttaataaattaacaACAATGTCTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65564 lncRNA upstream 22591 12220013 ~ 12223054 (+) True G49106
TU65559 lncRNA upstream 33130 12211744 ~ 12212515 (+) True G49105
TU65544 lncRNA upstream 99119 12146204 ~ 12146526 (+) True G49094
TU65536 lncRNA upstream 103118 12142142 ~ 12142527 (+) True G49086
TU65499 lncRNA upstream 154922 12090255 ~ 12090723 (+) False xkr5l
TU65598 lncRNA downstream 48594 12302654 ~ 12303403 (+) False si:dkey-70p6.1
TU65626 lncRNA downstream 110033 12364093 ~ 12364441 (+) True G49157
TU65700 lncRNA downstream 216390 12470450 ~ 12472272 (+) True G49221
TU65703 lncRNA downstream 220027 12474087 ~ 12476025 (+) True G49223
TU65712 lncRNA downstream 255982 12510042 ~ 12511578 (+) True G49230
XM_039801555.1 mRNA upstream 1844 12241046 ~ 12243801 (+) True LOC120559656
XM_039801556.1 mRNA upstream 1844 12241046 ~ 12243801 (+) False LOC120559656
XM_039801835.1 mRNA upstream 35236 12182209 ~ 12210409 (+) True nol4la
XM_039799909.1 mRNA upstream 103843 12129836 ~ 12141802 (+) True LOC120558724
XM_039801027.1 mRNA upstream 141746 12092821 ~ 12103899 (+) True LOC120559364
XM_039801781.1 mRNA downstream 29367 12283427 ~ 12303238 (+) True si:dkey-70p6.1
XM_039801782.1 mRNA downstream 29367 12283427 ~ 12303238 (+) False si:dkey-70p6.1
XM_039801783.1 mRNA downstream 29368 12283428 ~ 12303238 (+) False si:dkey-70p6.1
XM_039799407.1 mRNA downstream 89259 12343319 ~ 12347248 (+) True emilin3a
XM_039799416.1 mRNA downstream 97573 12351633 ~ 12363904 (+) True opn7d
unassigned_transcript_224 other upstream 22007 12223567 ~ 12223638 (+) True trnae-cuc_14
XR_005639365.1 other upstream 35236 12182209 ~ 12210409 (+) False nol4la
TU65506 other upstream 148808 12092779 ~ 12096837 (+) False LOC120559364
TU65120 other upstream 929653 11314662 ~ 11315992 (+) True G48765
TU65107 other upstream 1071991 11172595 ~ 11173654 (+) True G48752
TU65687 other downstream 198475 12452535 ~ 12458439 (+) True G49209
XR_005639089.1 other downstream 398550 12652610 ~ 12658308 (+) False LOC120558314
XR_005639216.1 other downstream 606661 12860721 ~ 12884287 (+) False LOC120559134
TU66161 other downstream 1278330 13532390 ~ 13534922 (+) True G49538
TU66274 other downstream 1858990 14113050 ~ 14121022 (+) False hmga1a

Expression Profile